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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_26814 | ||||||||
Common Name | KK1_029270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 28661.2 Da PI: 6.772 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l++++k++G+ +W++ ++ g+ R++k+c++rw++yl C.cajan_26814 14 RGAWSKEEDERLINYIKLHGTTNWRSLPQSAGLLRCGKSCRLRWLNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.3e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE +++++ +lG++ W+ Ia+t++ gRt++++k++w++ C.cajan_26814 67 RGNFTVEEANHIIHLHGLLGNK-WSQIAATLP-GRTDNEIKNYWNTC 111 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.827 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.95E-28 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.99E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.812 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-12 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.44E-8 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRTPCCDRE HTNRGAWSKE EDERLINYIK LHGTTNWRSL PQSAGLLRCG KSCRLRWLNY 60 LRPNIKRGNF TVEEANHIIH LHGLLGNKWS QIAATLPGRT DNEIKNYWNT CLKRHLISLG 120 IDPVTHNPLE KITTTPEANS QASGSGVTTT SDIHYFDVFL NSKVEISTDY AAGEEDSSSN 180 NVVTTSIEEV HPPLINLDLS LAPPSQPQEQ QEQVLSQRMC LRCGLGLQSN PSCSCQAMVS 240 VVTAPVSNNV EYQFFGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-27 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_26814 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020233543.1 | 0.0 | myb-related protein 308 | ||||
Swissprot | P81393 | 3e-76 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A151S2E1 | 0.0 | A0A151S2E1_CAJCA; Myb-related protein 308 family | ||||
STRING | XP_007159923.1 | 6e-95 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 5e-71 | myb domain protein 4 |
Publications ? help Back to Top | |||
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