PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_26764 | ||||||||
Common Name | KK1_027948 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 41067.4 Da PI: 8.9195 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.7 | 9.3e-53 | 9 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeel+ +yL+kkv++ +l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++++ C.cajan_26764 9 LPPGFRFHPTDEELILHYLRKKVASIPLPV-SIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKNIVASl 103 79****************************.89***************988899****************************************99 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ g+kk Lvfy+g+ pkg+kt+W+mheyrl C.cajan_26764 104 vrggVREHFGVKKALVFYEGKPPKGVKTNWIMHEYRL 140 98776677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-64 | 6 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.637 | 9 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-27 | 10 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MGTPQANNLP PGFRFHPTDE ELILHYLRKK VASIPLPVSI IAEVDIYKFD PWELPAKAAF 60 GEKEWYFFSP RDRKYPNGAR PNRAAGSGYW KATGTDKNIV ASLVRGGVRE HFGVKKALVF 120 YEGKPPKGVK TNWIMHEYRL VHSNRPISLK ETSMRLDDWV LCRIYKKSKQ VASSATEAAT 180 VQVNEQDEAK EDENKTKAPI SKISTLVPLP PLMSQKSLSF SNLLDATDYS MLSTILSENY 240 HYSNYTTPSD EGLFNCENLD HETPQNQNYY CNNNNSNSSY LFQKNPSVLP HMENMTRPKH 300 QLSNIDEDMV YPSKKYHSSS CNFPNTNLQN HNQQRNFMFK QPFISQQLLL GPQYLPFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-73 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-73 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-73 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-73 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-73 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-73 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-73 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-73 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-73 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-73 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-73 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-73 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-73 | 8 | 167 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-73 | 8 | 167 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_26764 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU661910 | 1e-125 | EU661910.1 Glycine max NAC domain protein (NAC8) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020232458.1 | 0.0 | NAC domain-containing protein 1 | ||||
Swissprot | Q84TD6 | 8e-97 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A151S5Z7 | 0.0 | A0A151S5Z7_CAJCA; NAC domain-containing protein 29 | ||||
STRING | XP_007151816.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6621 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-98 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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