PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_26683 | ||||||||
Common Name | KK1_028628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 22409.6 Da PI: 9.207 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.7 | 2.3e-16 | 18 | 63 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++++ +tfskR+ gi KKA+ELS+LC+a+v +++f s+g+ + y C.cajan_26683 18 KSNRDLLITFSKRKYGIHKKASELSTLCGAKVDILMFTSSGNWFSY 63 44455568*********************************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.413 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-18 | 7 | 82 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-15 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-12 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-16 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-12 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-12 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MDGREMKGKQ KRENKKVKSN RDLLITFSKR KYGIHKKASE LSTLCGAKVD ILMFTSSGNW 60 FSYGEPSHQA MARSSDEESP IELVEVHTKS EINELNAKNN ALMSQIYYEK KREDELDAIL 120 KTKNPRGWWE PKIQDLSREQ AMETEASFVE FKKKLENELS IKHREKENNA SQGEALLFLL 180 LTCLYYLKKT YY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_26683 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020232939.1 | 1e-122 | agamous-like MADS-box protein AGL23 | ||||
TrEMBL | A0A151S4C1 | 1e-139 | A0A151S4C1_CAJCA; Agamous-like MADS-box protein AGL62 | ||||
STRING | GLYMA08G08870.1 | 7e-64 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18229 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-23 | AGAMOUS-like 62 |