PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_26666 | ||||||||
Common Name | KK1_028610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | WRKY | ||||||||
Protein Properties | Length: 351aa MW: 38491.3 Da PI: 7.8142 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.3 | 1.6e-33 | 186 | 243 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ C.cajan_26666 186 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPTTVITTYEGQHNHP 243 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.5E-35 | 170 | 245 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-29 | 177 | 245 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.983 | 180 | 245 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-39 | 185 | 244 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-26 | 186 | 243 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MSVEPKELYY QDLVLDHNQQ GTGGSNSNTM FQKHFSSSLI PSGSTPYESQ AFDPSYLSFT 60 ECLQGGMDYN SLATSFGLSP SSSEVFSSVE GNQKVAATEG GDVGRGGGSG ASETLATLNS 120 SISSSSSEAG AEEDSGKSKK DRQVKAEDQG GENSNKKGNK DKKKGEKKQK EPRFAFMTKS 180 EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQKCTVKK RVERSFQDPT TVITTYEGQH 240 NHPVPTSLRG NAGAGMFTPS LLAAPTPLAA GSNFPQDLFL HMHHHHHIHN TLFNTQSTNP 300 TTITTTPSNI YSSHPSNIVN NSLLQNQFLP DQYGLLQDIV PSIFHNKTHH N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-29 | 175 | 245 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 8e-29 | 175 | 245 | 7 | 77 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_26666 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-113 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020232986.1 | 0.0 | WRKY transcription factor 28 | ||||
Swissprot | Q8VWJ2 | 4e-72 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A151S4C3 | 0.0 | A0A151S4C3_CAJCA; Putative WRKY transcription factor 28 | ||||
STRING | XP_007158965.1 | 1e-155 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2231 | 34 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 3e-50 | WRKY DNA-binding protein 28 |
Publications ? help Back to Top | |||
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