PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB

Protein Properties

Length: 267aa MW: 30142.7 Da PI: 7.8857

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_26530	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.7	8.7e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v+++G +W+ ++ g+ R++k+c++rw +yl C.cajan_26530 14 KGTWTPEEDMKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61 799***************99**********************97 PP
2	Myb_DNA-binding	57.7	2.7e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE+e +++ +k lG++ W++Ia++++ gRt++++k++w++ C.cajan_26530 67 RGNFTKEEEECIIRMHKDLGNR-WSAIAAELP-GRTDNEIKNHWHTT 111 89******************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.685	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.46E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-9	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	4.29E-9	16	61	No hit	No description
PROSITE profile	PS51294	27.446	62	116	IPR017930	Myb domain
SMART	SM00717	1.0E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-16	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-26	69	115	IPR009057	Homeodomain-like
CDD	cd00167	8.47E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MVRTPSCDKS GLRKGTWTPE EDMKLIAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY 60 LRPNLKRGNF TKEEEECIIR MHKDLGNRWS AIAAELPGRT DNEIKNHWHT TLKKSSQQST 120 LTNEEARASK SKDKRSKSVR DSVPIPNNGV TVSVTLPPTS QISDNSSGSL STLSSSSDFS 180 SISSDHSTAA SMENLAFEND LSFLDSFSEN NFWTQPYIAD MSHVPSELLA PSVIGSEYFA 240 PINEYQWGQS DLYNENTSIN VPREKVI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-29	12	115	5	107	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269\|PubMed:19122102}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_26530

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19122102, ECO:0000269\|PubMed:22197883, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	9e-40	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020232399.1	1e-129	transcription factor MYB30
Swissprot	Q6R0A6	2e-57	MYB63_ARATH; Transcription factor MYB63
TrEMBL	A0A151S689	0.0	A0A151S689_CAJCA; Myb-related protein Myb4
STRING	XP_007132611.1	1e-112	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF356	33	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	2e-57	myb domain protein 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Noda S, et al. The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63. Planta, 2015. 242(3): p. 589-600 [PMID:26070439] Vargas L, et al. Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants. Biotechnol Biofuels, 2016. 9: p. 139 [PMID:27390589]