PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_26405

Common Name

KK1_026373

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB_related

Protein Properties

Length: 272aa MW: 29851 Da PI: 8.0082

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_26405	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.4	6.8e-13	85	129	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I++ k+Rt+ q+ s+ qky C.cajan_26405 85 PWTEEEHKLFLGGLQKGGKGDWRGISKNYVKTRTPTQVASHAQKY 129 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.189	78	134	IPR017930	Myb domain
SuperFamily	SSF46689	2.23E-16	80	135	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-16	81	132	IPR006447	Myb domain, plants
SMART	SM00717	1.3E-7	82	132	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-10	84	129	IPR009057	Homeodomain-like
CDD	cd00167	2.80E-5	85	130	No hit	No description
Pfam	PF00249	1.5E-10	85	129	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MSRACAAADS AASGEIMLFG VRLVVDSMRK SASMNNFSQY EHPQDANYNN NSNKDALAAG 60 YASADDAVPQ NSGRHRERER KRGVPWTEEE HKLFLGGLQK GGKGDWRGIS KNYVKTRTPT 120 QVASHAQKYF LRRSNLNRRR RRSSLFDITT DSVSANPMEE EQVQNQDALC HAVPETNGFQ 180 FPMMQEYQLG LNSGVQGGNR MEELTLGHGN VEQNVADPKG CTVSPSSSSV VEPPTLSLGL 240 SFSSDQRQTS SRHSALHAIP CFNNGDSIIS VA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_26405

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031191	1e-165	KT031191.1 Glycine max clone HN_CCL_30 MYB/HD-like transcription factor (Glyma05g01640.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020231060.1	0.0	transcription factor MYB1R1
Swissprot	Q2V9B0	3e-64	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A151SAA6	0.0	A0A151SAA6_CAJCA; Myb-like protein J
STRING	XP_007155372.1	1e-134	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	4e-37	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]