PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_25340
Common NameKK1_026581
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 441aa    MW: 51057.6 Da    PI: 7.6217
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_25340genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.4e-17167213148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd ll+++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
    C.cajan_25340 167 KGQWTIEEDGLLIQLVEQYGLRKWSHIAKVLP-GRIGKQCRERWHNHL 213
                      799*****************************.*************97 PP
2Myb_DNA-binding57.33.7e-18219261145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W+ eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
    C.cajan_25340 219 KDTWSDEEDKILIQAHAEVGNK-WAEIAKRLP-GRTENSIKNHWN 261
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.323162217IPR017930Myb domain
SuperFamilySSF466891.4E-31164260IPR009057Homeodomain-like
SMARTSM007179.3E-15166215IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-28168221IPR009057Homeodomain-like
CDDcd001671.32E-14170213No hitNo description
PfamPF139214.3E-17170225No hitNo description
PROSITE profilePS5129422.401218268IPR017930Myb domain
SMARTSM007175.6E-18218266IPR001005SANT/Myb domain
CDDcd001678.53E-14221264No hitNo description
Gene3DG3DSA:1.10.10.601.6E-22222266IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MHLQESCLQP SMKDMLAFGN PSSSQGFLQD FHQIDQFHVN ESSSNPIQTP NFDALDNFTF  60
KSSSSFDVYE CKPFVENSGN AHVMDNFLYG NYSLNHPPRN QLDITVANQS FLPFNPQETK  120
FSNYVAPDEV SSISPMNYYK RVGVNKNNKS YPTRRTYKIR KKSNIVKGQW TIEEDGLLIQ  180
LVEQYGLRKW SHIAKVLPGR IGKQCRERWH NHLRPDIKKD TWSDEEDKIL IQAHAEVGNK  240
WAEIAKRLPG RTENSIKNHW NATKRRQYSK RKCRSKYPRG TLLQDYIKSL NLDKNPPIDY  300
RRKSSVNYAK AMKSKTTTSK ATAPPLPQAA YQFCATDNSM PPNYDFNNVV PDCFFGENFF  360
EEGYSIDSLL DDVPRALPMD KKMQCDPIIL EAKHYDHVVN IDENNNHVES EVPLEMLEVE  420
VKKELDLVEM MFQINNEVVH V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-451652672104C-Myb DNA-Binding Domain
1msf_C2e-451652672104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_25340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020231174.10.0transcription factor MYB98
SwissprotQ9S7L28e-94MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A151S9V00.0A0A151S9V0_CAJCA; Transcription factor MYB98
STRINGGLYMA06G19280.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-94myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]