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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_24866 | ||||||||
Common Name | KK1_024964 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 313aa MW: 35296.6 Da PI: 7.9438 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl C.cajan_24866 14 RGPWSPEEDFKLKSYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.1 | 7.3e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ C.cajan_24866 69 GGFSEEEDSIICSLYVNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.183 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.39E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.73E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.51 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.08E-7 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDFKLKSYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDSIIC SLYVNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK 120 QRKEQQAQAR RVCSLNQEMK RETENLMLPV GVITQTPYWP QHHPMTNAST STQYSDLKHF 180 PNSIVTATMN SQYSSCDTSL TQDQLYPSTM NMVTTDTCHT STSSNVFQGF GNFPSDLSEL 240 ACANPRKIDG SMRGFYGLES MDVANGSTNT TSTESTSWGD ISSLVYSPLV SDYEQRMPQH 300 VTFEESSYFA MQT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_24866 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097403 | 1e-123 | BT097403.1 Soybean clone JCVI-FLGm-16K1 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020229594.1 | 0.0 | transcription factor RAX3 | ||||
Swissprot | Q9M2Y9 | 8e-86 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A151SE85 | 0.0 | A0A151SE85_CAJCA; Transcription factor RAX3 | ||||
STRING | XP_007155794.1 | 1e-169 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 9e-76 | myb domain protein 84 |
Publications ? help Back to Top | |||
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