PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24866
Common NameKK1_024964
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 313aa    MW: 35296.6 Da    PI: 7.9438
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24866genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
    C.cajan_24866 14 RGPWSPEEDFKLKSYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding37.17.3e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
    C.cajan_24866  69 GGFSEEEDSIICSLYVNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.183962IPR017930Myb domain
SuperFamilySSF466893.39E-2611109IPR009057Homeodomain-like
SMARTSM007171.7E-121364IPR001005SANT/Myb domain
PfamPF002497.2E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-241569IPR009057Homeodomain-like
CDDcd001678.73E-101662No hitNo description
PROSITE profilePS5129420.5163117IPR017930Myb domain
SMARTSM007173.1E-1067115IPR001005SANT/Myb domain
PfamPF002492.1E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2370117IPR009057Homeodomain-like
CDDcd001673.08E-771111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDFKLKSYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDSIIC SLYVNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
QRKEQQAQAR RVCSLNQEMK RETENLMLPV GVITQTPYWP QHHPMTNAST STQYSDLKHF  180
PNSIVTATMN SQYSSCDTSL TQDQLYPSTM NMVTTDTCHT STSSNVFQGF GNFPSDLSEL  240
ACANPRKIDG SMRGFYGLES MDVANGSTNT TSTESTSWGD ISSLVYSPLV SDYEQRMPQH  300
VTFEESSYFA MQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24866
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0974031e-123BT097403.1 Soybean clone JCVI-FLGm-16K1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229594.10.0transcription factor RAX3
SwissprotQ9M2Y98e-86RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A151SE850.0A0A151SE85_CAJCA; Transcription factor RAX3
STRINGXP_007155794.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.19e-76myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]