PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

ARF

Protein Properties

Length: 531aa MW: 57858.3 Da PI: 7.4198

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_24724	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.2	4.5e-11	115	155	57	99
TEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 57 gryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +r++lt+GW++Fv++++L +gD++vF + +++ l+v+++r+ C.cajan_24724 115 RRHLLTTGWSNFVNQKRLVAGDSIVFL--RAENGDLCVGIRRA 155 789**********************..4488999**997 PP
2	Auxin_resp	113.3	2.4e-37	203	285	2	83
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 ++ a ++ +FevvY+Pras++eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+ C.cajan_24724 203 VTCAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 285 6678899**************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-5	81	114	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.84E-15	83	156	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.27E-12	86	154	No hit	No description
SMART	SM01019	0.0032	87	156	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-8	115	155	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.5E-12	115	157	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.446	116	156	IPR003340	B3 DNA binding domain
Pfam	PF06507	6.6E-33	203	285	IPR010525	Auxin response factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MERGSERCLD SQLWHACAGA MVQMPPLNTK VFYFPQGHAE HARGKVDFGQ TRIPPFIPCR 60 LSAMKYMADP DTDEVGVEGQ EKPPTSFAKT LTQSDANNGG GFSVPRYCAE TIFPRRHLLT 120 TGWSNFVNQK RLVAGDSIVF LRAENGDLCV GIRRAKKGIG GGAEFSSGWN PLFGGGSGFL 180 SGAKGGGDEM VGRVAAESVL EAVTCAVNGR PFEVVYYPRA SSPEFCVKAS VVKAAMQIQW 240 CSGMRFKMPF ETEDSSRISW FMGTISSVQV ADPIRWPDSP WRLLQVVWDE PDLLQNVKCV 300 NPWLVELVSN MPTFNLSAYS PPRKKQRFIQ DPYFQVINQL PMPSFSGNLL NYTNSLCNIE 360 NNSSAGIQGA RHAQFGLSPS DFPFNKLQAD MLLGGFSRLD HAAQPIRPPC GTYKSNPATK 420 ANVDISCLLT VGTPGQNYKE SNETKAPHIL LFGKLIHTEQ KSSNTSSAST AGNSVSEGNS 480 LKTSNASDGI GSALHQSSPI ENNSDGGSPW YKDQHKSDLE TETVNTLCMA L

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MERGSERCLD SQLWHACAGA MVQMPPLNTK VFYFPQGHAE HARGKVDFGQ TRIPPFIPCR  60
LSAMKYMADP DTDEVGVEGQ EKPPTSFAKT LTQSDANNGG GFSVPRYCAE TIFPRRHLLT  120
TGWSNFVNQK RLVAGDSIVF LRAENGDLCV GIRRAKKGIG GGAEFSSGWN PLFGGGSGFL  180
SGAKGGGDEM VGRVAAESVL EAVTCAVNGR PFEVVYYPRA SSPEFCVKAS VVKAAMQIQW  240
CSGMRFKMPF ETEDSSRISW FMGTISSVQV ADPIRWPDSP WRLLQVVWDE PDLLQNVKCV  300
NPWLVELVSN MPTFNLSAYS PPRKKQRFIQ DPYFQVINQL PMPSFSGNLL NYTNSLCNIE  360
NNSSAGIQGA RHAQFGLSPS DFPFNKLQAD MLLGGFSRLD HAAQPIRPPC GTYKSNPATK  420
ANVDISCLLT VGTPGQNYKE SNETKAPHIL LFGKLIHTEQ KSSNTSSAST AGNSVSEGNS  480
LKTSNASDGI GSALHQSSPI ENNSDGGSPW YKDQHKSDLE TETVNTLCMA L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	2e-50	9	306	51	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_24724

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020229756.2	0.0	auxin response factor 18
Swissprot	Q653H7	0.0	ARFR_ORYSJ; Auxin response factor 18
TrEMBL	A0A151SE65	0.0	A0A151SE65_CAJCA; Auxin response factor
STRING	XP_007143708.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF637	34	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	1e-164	auxin response factor 16

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Huang J,Li Z,Zhao D Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice. Sci Rep, 2016. 6: p. 29938 [PMID:27444058]