PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_24679

Common Name

KK1_025042

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB_related

Protein Properties

Length: 154aa MW: 17766.7 Da PI: 4.3044

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_24679	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.1	6.5e-11	15	50	1	33
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...T CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...k 33 +g+W++eEd++l+++v+++G g W+ +++ g C.cajan_24679 15 KGPWSAEEDKILINYVQLHGEGKWRELSKRAGiesP 50 79***************************9996654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-12	7	44	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.142	10	57	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.0E-8	12	47	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-9	15	57	IPR001005	SANT/Myb domain
CDD	cd00167	7.50E-7	17	57	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MKRKSSCENQ DGVNKGPWSA EEDKILINYV QLHGEGKWRE LSKRAGIESP RCSRNSCFIG 60 CPEAVNDSVN TMSLIPPSWD NQNPFAYIPQ DDNDHYLRSV LQDFDITDML VSYEDDCRFG 120 RYACVEIPQH FGDEAYMIND AIGETWYENW KIDA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_24679

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-31	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003535515.1	6e-36	transcription factor TT2
Refseq	XP_028184166.1	6e-36	transcription factor TT2-like
TrEMBL	A0A151SE84	1e-112	A0A151SE84_CAJCA; Myb-related protein Myb4
STRING	GLYMA10G35061.1	2e-35	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF30879	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05100.1	2e-13	myb domain protein 74