PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_24676

Common Name

KK1_025039

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Trihelix

Protein Properties

Length: 328aa MW: 37079.6 Da PI: 9.8669

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_24676	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.6	6.8e-18	43	141	2	86
trihelix 2 WtkqevlaLiearr.emeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 Wt qe+l Li+a++ ++e+rl+++ + + +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e k+++ +++++p + C.cajan_24676 43 WTIQETLILITAKKlDDERRLKTSHdptraacsttartSGELRWKWVENYCWSHGCLRSQNQCNDKWDNLLRDYKKVRDYEFKQQQSNEKHFPSYW 138 ***********944444444443566667777887799*****************************************9999999999999 PP trihelix 84 qle 86 +l+ C.cajan_24676 139 NLN 141 886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-5	34	115	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.771	35	113	IPR017877	Myb-like domain
Pfam	PF13837	1.4E-11	42	141	No hit	No description
SuperFamily	SSF101447	2.51E-5	205	215	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MSDPSTTPLP PPPLLPSPHH LIQGGATASS SSSLAREYRK GNWTIQETLI LITAKKLDDE 60 RRLKTSHDPT RAACSTTART SGELRWKWVE NYCWSHGCLR SQNQCNDKWD NLLRDYKKVR 120 DYEFKQQQSN EKHFPSYWNL NKQQRKEHNL PSNMVFDVYQ AITEVLQRKQ TQPQAQTQRQ 180 PAVTLVTSSP LQTLPPPPPP PPPPPPPPPP PPPPPVSSAT QAVSERSESS GTEHSEDDDG 240 SESKRRKVKN LGSSIMRSAS VLARALRSCE EKKEKRHREL IELEQRRIQM EEARNEVHRQ 300 GIATLVAAVT NLSGAIQSLI NSERHGQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_24676

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF221013	4e-98	KF221013.1 Glycine max cultivar Kwangkyo clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBank	KF221014	4e-98	KF221014.1 Glycine max cultivar Ilpumgeomjeong clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBank	KF221016	4e-98	KF221016.1 Glycine max cultivar PI96983 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBank	KF221018	4e-98	KF221018.1 Glycine max cultivar Geomjeongol clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBank	KF221020	4e-98	KF221020.1 Glycine soja cultivar IT162825 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBank	KF221023	4e-98	KF221023.1 Glycine soja cultivar IT182840 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBank	KF221024	4e-98	KF221024.1 Glycine soja cultivar IT182848 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBank	KF221025	4e-98	KF221025.1 Glycine soja cultivar IT182932 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020229739.1	0.0	trihelix transcription factor GTL1
TrEMBL	A0A151SE87	0.0	A0A151SE87_CAJCA; Uncharacterized protein
STRING	GLYMA20G32540.2	1e-147	(Glycine max)
STRING	XP_007143775.1	1e-147	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-45	Trihelix family protein