PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_24657 | ||||||||
Common Name | KK1_025018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 439aa MW: 49394.3 Da PI: 5.0619 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.4 | 2.9e-32 | 39 | 178 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWk 84 lp+G++F+P+d+e++++ L+k +g++ ++++ + ++ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+ + +W+ C.cajan_24657 39 LPKGVKFDPSDQEIIWHLLAKVGAGNSrphpfIDEFITtLEADgGICYTHPQHLP-GVKQDGNASHFFHRAIKAYNTGSRKRRKicdqdFGDVRWH 133 799************888888777777786553333332333346**********.778889999******************74444434889** PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tg++k+v+ +g ++g+kk++v+y r k+ekt+Wvmh+y+l C.cajan_24657 134 KTGRTKPVIF-NGVQKGCKKIMVLYvsLVRGGKSEKTNWVMHQYHL 178 **********.999***********6545888889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-39 | 24 | 197 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.191 | 39 | 197 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-14 | 40 | 178 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MSASGSCGKV IWKSNPARAC PNCEHVIDNS DVSQEWPGLP KGVKFDPSDQ EIIWHLLAKV 60 GAGNSRPHPF IDEFITTLEA DGGICYTHPQ HLPGVKQDGN ASHFFHRAIK AYNTGSRKRR 120 KICDQDFGDV RWHKTGRTKP VIFNGVQKGC KKIMVLYVSL VRGGKSEKTN WVMHQYHLGT 180 QEDEKDGEYV ISKVFYQQLQ VKFGENDDQD IPEITEATLL KVDPVTPKSV TPEPPRIEKQ 240 CSNLDLKLKE ESRHIPQDAS RNENVAVLLQ FGLIFSSPKS ILSAVSGFNL RHMDCIDDLQ 300 ADCEDLAKDD LLVVDTQNNK GIDNIENNAE EDSKWWDSES QNLLSSQQLV EALFLCDDLL 360 QSQSPSRDGE NEHKKRPSLS VYAHLGPEHL KKDIEECQNL VLDTTNVEPE TVPSELRLSQ 420 LDFSTQDSFI SWGDCKAID |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_24657 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096579 | 0.0 | BT096579.1 Soybean clone JCVI-FLGm-20J20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020229754.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 | ||||
Refseq | XP_020229755.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-153 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A151SDX6 | 0.0 | A0A151SDX6_CAJCA; NAC domain-containing protein 8 | ||||
STRING | GLYMA20G32690.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-149 | NAC family protein |