PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_24461 | ||||||||
Common Name | KK1_025677 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 293aa MW: 31935 Da PI: 10.4058 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.3 | 5.3e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ C.cajan_24461 5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilRMRSNVDLKDKWRN 55 79***********************************9***********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.669 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-15 | 2 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-12 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 6.30E-17 | 6 | 57 | No hit | No description |
SMART | SM00526 | 3.0E-10 | 115 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 7.07E-14 | 115 | 195 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 20.01 | 117 | 186 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 2.3E-13 | 119 | 186 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.6E-9 | 122 | 176 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043047 | Molecular Function | single-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSSI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKNLPSPK IDNNHMALRN VVQRDKEVAD LKPLGVSGGT SPNSKEKISR 120 LDNLILESII KLKESKGSDR AAIAAYIEDQ YCSTPTLRKL LSTKLKHMVA SGKLMKQVKH 180 KYRIATNLSI SEKRCSSLLL LEGRPKDSPK AEKTDVNILS KSEIDAELSK IKGVTPQEAA 240 AAAAKAVAEA EAAIAEAEAA AREADAAEAE AEAARVFAKA AIKALKCKTL HIW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00626 | PBM | Transfer from PK06103.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_24461 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020230355.1 | 1e-180 | telomere repeat-binding factor 2 | ||||
Refseq | XP_020230356.1 | 1e-180 | telomere repeat-binding factor 2 | ||||
Refseq | XP_020230357.1 | 1e-180 | telomere repeat-binding factor 2 | ||||
Refseq | XP_020230358.1 | 1e-180 | telomere repeat-binding factor 2 | ||||
Refseq | XP_029129750.1 | 1e-180 | telomere repeat-binding factor 2 | ||||
Refseq | XP_029129751.1 | 1e-180 | telomere repeat-binding factor 2 | ||||
Refseq | XP_029129752.1 | 1e-180 | telomere repeat-binding factor 2 | ||||
Swissprot | Q9FJW5 | 3e-74 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A151SC30 | 0.0 | A0A151SC30_CAJCA; Histone H1 | ||||
STRING | XP_007156706.1 | 1e-160 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 1e-74 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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