PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23838
Common NameKK1_024528
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family AP2
Protein Properties Length: 265aa    MW: 29595.9 Da    PI: 7.5703
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23838genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-18153202155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  C.cajan_23838 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDRAAIKFRG 202
                    78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.8E-10153202IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-16153211IPR016177DNA-binding domain
CDDcd000183.00E-12153209No hitNo description
SMARTSM003804.9E-32154216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-17154211IPR001471AP2/ERF domain
PROSITE profilePS5103217.991154210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MFDLNVDIKH ADVDADADSE SSWAEKGVQV QLQNLPPEIS DSRTSNSSVC NPAEEDSSNN  60
SSPLIFDIMK KERHGSEFGG VTERGNNNKE QNMAQETEIV TADKGGGVAD IKLGLWGKTQ  120
WLNMSFPEPD GKNGLKSLPH VRKNRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL  180
GGFDTAQAAA RAYDRAAIKF RGVDADINFS LSDYEEDLNQ MKGLSKEEFV LLLRRQINGI  240
SKRSSTYRGV LAQAEPRMGP FLGKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23838
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310711e-145KT031071.1 Glycine max clone HN_CCL_188 AP2-EREBP transcription factor (Glyma02g09600.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229257.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
RefseqXP_020229258.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
TrEMBLA0A151SFS00.0A0A151SFS0_CAJCA; Ethylene-responsive transcription factor RAP2-7
STRINGXP_007145449.11e-133(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15652911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-51related to AP2.7