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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_23770 | ||||||||
Common Name | KK1_024458 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | GATA | ||||||||
Protein Properties | Length: 57aa MW: 6420.5 Da PI: 8.7067 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.6 | 2.2e-15 | 9 | 42 | 1 | 32 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 C++Cg ++ Tp++Rrgp+g+++LCnaCGl ++ C.cajan_23770 9 CTHCGISSkcTPMMRRGPSGPSSLCNACGLSWAN 42 ******999***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.0E-5 | 3 | 57 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.4E-12 | 8 | 42 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 5.7E-9 | 8 | 43 | No hit | No description |
Pfam | PF00320 | 6.2E-13 | 9 | 42 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 9 | 36 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
CEFSCLNRCT HCGISSKCTP MMRRGPSGPS SLCNACGLSW ANRVGFLHFA KLYFYYF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_23770 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_194178.1 | 5e-19 | GATA-type zinc finger protein with TIFY domain-containing protein | ||||
Refseq | NP_849435.1 | 5e-19 | GATA-type zinc finger protein with TIFY domain-containing protein | ||||
Refseq | XP_020873632.1 | 5e-19 | GATA transcription factor 25 | ||||
Refseq | XP_020873633.1 | 5e-19 | GATA transcription factor 25 | ||||
Swissprot | Q9LRH6 | 5e-20 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A151SFJ7 | 2e-34 | A0A151SFJ7_CAJCA; GATA transcription factor 26 (Fragment) | ||||
STRING | fgenesh2_kg.7__1832__AT4G24470.2 | 2e-18 | (Arabidopsis lyrata) | ||||
STRING | Bostr.7867s0254.1.p | 2e-18 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24296 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 2e-22 | GATA-type zinc finger protein with TIFY domain |
Publications ? help Back to Top | |||
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