PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23330
Common NameKK1_024016
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ERF
Protein Properties Length: 231aa    MW: 26391.7 Da    PI: 6.9215
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23330genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-172373155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +++ GVr++  +g+W+AeI+d s   k+ r +lg++ taeeAa+a+++a+  l+g
  C.cajan_23330 23 PKFVGVRQRA-SGKWAAEIKDTS---KKIRMWLGTYQTAEEAARAYDEAACLLRG 73
                   799****999.7*********42...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.55E-312380No hitNo description
PfamPF008473.1E-122373IPR001471AP2/ERF domain
PROSITE profilePS5103219.442481IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-192482IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-272481IPR001471AP2/ERF domain
SMARTSM003801.2E-352487IPR001471AP2/ERF domain
PRINTSPR003674.4E-72536IPR001471AP2/ERF domain
PRINTSPR003674.4E-74763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEYQDQKAKE GRFYEKLKIK NKPKFVGVRQ RASGKWAAEI KDTSKKIRMW LGTYQTAEEA  60
ARAYDEAACL LRGSNTRTNF STHEYANATN SPIYLKLRNL LDRKAMPNQV QIQNNSPMIS  120
ATFQGAPSGS TSTMNNIMVM EDNFASSSEG KSLLLLQNQV SDDNMCGFDM NMFNCSMGIT  180
SNMSHFDYSW PLAQQRSNEL PIAKDGLNEW HVEDTYEYDV NYPLSHFFCF T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1424851475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. May act as transcriptional repressor of NF-responsive box-containing target gene promoters in root hairs. {ECO:0000269|PubMed:17827349}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23330
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215531.11e-177ethylene-responsive transcription factor ERN3
SwissprotA9Y0K97e-91ERN3_MEDTR; Ethylene-responsive transcription factor ERN3
TrEMBLA0A151TKZ21e-175A0A151TKZ2_CAJCA; Ethylene-responsive transcription factor RAP2-11
STRINGGLYMA05G29011.11e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF156461010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-28related to AP2 11
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]