PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_23161 | ||||||||
Common Name | KK1_023841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 443aa MW: 49936.6 Da PI: 6.9741 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.5 | 1.1e-35 | 47 | 189 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp+G++F+Ptd+el+ e+L++kve+k+ + + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ C.cajan_23161 47 LPAGVKFDPTDQELI-EHLEAKVEAKNmrshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnecdlq 137 799************.99*********5554442...143333666646**********.555666799******************845555544 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl+ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l C.cajan_23161 138 GGETRWHKTGKTRPVLV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189 33778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-38 | 43 | 208 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.992 | 47 | 208 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-16 | 48 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MNKMSNLSCV RSSDLIDAKL EEHQLCGSKQ CPGCGHKFEG KPDWLGLPAG VKFDPTDQEL 60 IEHLEAKVEA KNMRSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QNECDLQGGE TRWHKTGKTR PVLVNGKQKG CKKILVLYTN FGKNRKPEKT 180 NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRS ATTGEGSGDQ QQPNSGIRES 240 GSGSCSSKEI VTHRDEMSAV VGVPPMTTFN TALDLQQLNS DHFGFIPFRK SFDEVGIGEA 300 SRAREVQASG SCDEAHERHV AHHHQQQQHA HQQIATTAFH ISTPSHPIST IISPPPLHHA 360 SIILDDNSYH VSRIMLQNEN FQQQQQQHHK LGGRSGSGLE ELIMGCTSTD IKEESSITNQ 420 QEAEWLKYSS YWPDPGNLQD HHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-13 | 45 | 189 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_23161 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020215774.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Refseq | XP_029127290.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Refseq | XP_029127291.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Swissprot | Q9M0F8 | 0.0 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A151TKC8 | 0.0 | A0A151TKC8_CAJCA; NAC domain-containing protein 8 | ||||
STRING | XP_007160268.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4520 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-160 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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