PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_22969
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 520aa    MW: 57131.5 Da    PI: 5.3293
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_22969genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.61e-1371565111374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv+++++cAeav +++l+ a+al++++  la ++  +m+++a+yf+eALa+r+++        +pp ++     s++l++   f+e++P+lkf+h+
  C.cajan_22969 156 LVHTMMACAEAVGTNNLAVAEALVKQIGFLAVSQVGAMRKVATYFAEALARRIYG-------VFPPHHA----LSDALQI--HFYETCPYLKFAHF 238
                    6899***************************************************.......3444444....4555554..4************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    taNqaIlea++g++rvH+iDf+i+qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++A++++v+fe++ +va++l+dl+ +
  C.cajan_22969 239 TANQAILEAFQGKSRVHVIDFGINQGMQWPALMQALALRPGGPPVFRLTGIGPPAADNSDHLQEVGWKLAQLADTIHVQFEYRGFVANSLADLDAS 334
                    ************************************************************************************************ PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                    +L+++++E++aVn+v++ h+ll++++++e+    vL++v++++Pk+++vveqea+hn++sF++rf+e+l+yys+lfdsle +  + + +++ ++++
  C.cajan_22969 335 MLELREEESVAVNSVFEFHKLLARPGAVEK----VLSVVRQIRPKILTVVEQEASHNGSSFVDRFTESLHYYSTLFDSLEGS--PVNPQDKAMSEV 424
                    ******************************....*********************************************999..67899999999* PP

           GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +lgr+i+nvvaceg er+erhetl++Wr+r+++aGF+pv l+++a kqa++ll+ ++ +dgyrvee+sgsl+lgW++rpL+++SaW+
  C.cajan_22969 425 YLGRQICNVVACEGVERVERHETLNQWRNRFSSAGFSPVYLGSNAFKQASTLLALFAgGDGYRVEENSGSLMLGWHTRPLIATSAWQ 511
                    **************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.1E-2930102No hitNo description
PfamPF120411.8E-313094IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.947130490IPR005202Transcription factor GRAS
PfamPF035143.6E-135156511IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MKREHEQLGS NGGSSSGKSN LWGEEDGGMD ELLAVVGYKV RSSDMAEVAQ KLERLEEAMG  60
NVQEGISDLS NDVVHYNPSD ISNWLETILS NFDTLSPEDP EKDSASSDYD LKAIPGKAIY  120
APTPLPQQPN PSKRLKPSES TRALLLVDSQ ENGIRLVHTM MACAEAVGTN NLAVAEALVK  180
QIGFLAVSQV GAMRKVATYF AEALARRIYG VFPPHHALSD ALQIHFYETC PYLKFAHFTA  240
NQAILEAFQG KSRVHVIDFG INQGMQWPAL MQALALRPGG PPVFRLTGIG PPAADNSDHL  300
QEVGWKLAQL ADTIHVQFEY RGFVANSLAD LDASMLELRE EESVAVNSVF EFHKLLARPG  360
AVEKVLSVVR QIRPKILTVV EQEASHNGSS FVDRFTESLH YYSTLFDSLE GSPVNPQDKA  420
MSEVYLGRQI CNVVACEGVE RVERHETLNQ WRNRFSSAGF SPVYLGSNAF KQASTLLALF  480
AGGDGYRVEE NSGSLMLGWH TRPLIATSAW QLAANSLFPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6815151013377Protein SCARECROW
5b3h_D2e-6815151013377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_22969
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020222700.10.0DELLA protein GAI1
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A445KN870.0A0A445KN87_GLYSO; DELLA protein RGA2 isoform A
TrEMBLE3NYP40.0E3NYP4_SOYBN; Gibberellin insensitive
STRINGGLYMA05G27190.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein