PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_22459 | ||||||||
Common Name | KK1_023121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 21776.4 Da PI: 6.2818 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 101 | 151 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ r++lg+f ++ +Aaka++ a+ +++g C.cajan_22459 101 RYRGVRRRP-WGKFAAEIRDPRKK--GSRVWLGTFESEIDAAKAYDCAAFRMRG 151 7********.**********9653..3**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-12 | 101 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.197 | 101 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-31 | 101 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-35 | 101 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-22 | 101 | 161 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-13 | 102 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.98E-23 | 109 | 159 | No hit | No description |
PRINTS | PR00367 | 3.6E-13 | 141 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MATEEETTTL KLLRQYLLGD VSDPFLNNLI PVKLEDPSSS DLDLGANFPE QSSFCTFLEC 60 FDLEADTEVH EVQIQNSTAT SPPQNSFFAE AMVSEKKEAR RYRGVRRRPW GKFAAEIRDP 120 RKKGSRVWLG TFESEIDAAK AYDCAAFRMR GQKAVLNFPL EAGNYHPEPN TCGRKRRREY 180 TTPATTSTHV MS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-28 | 98 | 160 | 2 | 64 | ATERF1 |
3gcc_A | 6e-28 | 98 | 160 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 177 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_22459 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090081 | 5e-96 | BT090081.1 Soybean clone JCVI-FLGm-3H9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020222478.1 | 1e-143 | ethylene-responsive transcription factor ERF107 | ||||
TrEMBL | A0A151T0Z7 | 1e-142 | A0A151T0Z7_CAJCA; Ethylene-responsive transcription factor ERF106 family | ||||
STRING | GLYMA20G33800.1 | 1e-103 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 3e-34 | ERF family protein |