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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_22433 | ||||||||
Common Name | KK1_023094 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 305aa MW: 33836.4 Da PI: 7.0414 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.0007 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H C.cajan_22433 142 YECKTCNRTFPSFQALGGHRASH 164 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 191 | 213 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H C.cajan_22433 191 HECSICGAEFTSGQALGGHMRRH 213 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.7E-13 | 141 | 166 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.39E-8 | 141 | 213 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 142 | 169 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 142 | 164 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 144 | 164 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.4E-13 | 190 | 215 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 191 | 213 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.723 | 191 | 213 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 193 | 213 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MEAPEELKDH TNILKGKRTK RVRPQSPIPF SITANSSTGG DGDREEEEED CNNNNLRINN 60 NNNNNNNNSQ SSPTTSSAGL QDSTDEEEDM ANCLILLAQG QSREPQRLPA EEDGGMSYAK 120 YSSRKFLEAA TLGSSRAGYY VYECKTCNRT FPSFQALGGH RASHKKPKAM MGIGQEKKHQ 180 LLFNNNKSKV HECSICGAEF TSGQALGGHM RRHRAPVGTA IPAAATTLSF TPLPLEPEED 240 HPRKKRNVLN LDLDLNLPAP EDDQRESKFA FASKQQQQHG QKQQQQQQQQ TSLVFPAPAL 300 VDCHY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_22433 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020222920.1 | 1e-174 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A151T0V1 | 0.0 | A0A151T0V1_CAJCA; Zinc finger protein 1 | ||||
STRING | GLYMA20G33480.1 | 1e-145 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 5e-68 | C2H2 family protein |