PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_22328 | ||||||||
Common Name | KK1_022986 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ARR-B | ||||||||
Protein Properties | Length: 635aa MW: 69301.5 Da PI: 6.364 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.9 | 5.5e-29 | 211 | 264 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl C.cajan_22328 211 KPRVVWSVELHRKFVAAVNQL-GLDKAVPKKILDLMNVEGLTRENVASHLQKYRL 264 79*******************.********************************8 PP | |||||||
2 | Response_reg | 85.5 | 1.6e-28 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl vdD+p+ +++l+++l+k +y +v+++ ++ eal++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++ +++ + + Ga C.cajan_22328 26 VLAVDDDPICLKVLENLLRKCQY-QVTTTNQAAEALKMLRENRnkFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGVTHGA 119 799********************.***************999889*******************87754.558*********************** PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 d+l Kp+ +eel + C.cajan_22328 120 CDYLLKPVRMEELKN 134 ************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 5.7E-167 | 1 | 631 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.85E-37 | 23 | 144 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 5.3E-45 | 23 | 158 | No hit | No description |
SMART | SM00448 | 1.1E-35 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 45.802 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.0E-26 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.02E-31 | 27 | 140 | No hit | No description |
PROSITE profile | PS51294 | 12.009 | 208 | 267 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-30 | 208 | 268 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.02E-20 | 209 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.6E-25 | 211 | 264 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-7 | 213 | 263 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MAVENQRGHL GNEDGGNDPF PVGMRVLAVD DDPICLKVLE NLLRKCQYQV TTTNQAAEAL 60 KMLRENRNKF DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTKL VMKGVTHGAC 120 DYLLKPVRME ELKNIWQHVI RRKNSDGKDQ NKSSNEEKAP NIAGEGSQGL RSENSADQNK 180 RLGKRRKDQS EDEEEDGEGN GDEEDPSAQK KPRVVWSVEL HRKFVAAVNQ LGLDKAVPKK 240 ILDLMNVEGL TRENVASHLQ KYRLYLKKAA QQANMVAALG GSDSYLRMGS IDGYGDFCTS 300 SGTGRISNST LPSYASSGIF SRLNSPAGLN MRGISSSALI RPVQSQNINS SLNTLGNIPP 360 SMFPANQSSG LLQGIPTSIE LNQSKQSNCA TGISPLNQVD SSGFTVASSF PDSRATVNGS 420 NNSLPCVSNN RIMLQGNPQQ THSPGAFKNQ PSVRAASLSA EPFDMGVCGS SNLLDYNRCN 480 ENWQSAAHLS KFPANSLPLC DAFGNDQLPP TSINVSNSTT HIGNSSADFS SRMTIPVSLD 540 DARNELRCQE GLIGNIVQPS SYASQQRWEE RLDYNQSMNR PFNPGNSHAS SSGVTNIRLK 600 SNEAYILEQM KSQDGFMQNT FSTLDDLMGA MVKRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-25 | 207 | 270 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_22328 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094204 | 0.0 | BT094204.1 Soybean clone JCVI-FLGm-18G16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020222711.1 | 0.0 | two-component response regulator ORR24 isoform X1 | ||||
Swissprot | Q6K8X6 | 1e-144 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A151T0L1 | 0.0 | A0A151T0L1_CAJCA; Two-component response regulator | ||||
STRING | GLYMA15G24770.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-128 | response regulator 12 |
Publications ? help Back to Top | |||
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