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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_21851 | ||||||||
Common Name | KK1_022501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 22833 Da PI: 8.8667 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.6 | 1.7e-37 | 11 | 108 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk++r+kC+++C+lapyfp++++++f +vhk+FG+sn++kl+k+++ee+r+++++sl++eA++r+rdP++G +g ++k+ ++++++ el++ C.cajan_21851 11 ACAACKHQRKKCSENCILAPYFPSNRSREFHAVHKVFGVSNITKLVKNAKEEDRRRVVDSLIWEACCRQRDPIHGPYGEYTKVYNEYKKVLDELKR 106 7****************************************************************************************9999987 PP DUF260 97 lk 98 + C.cajan_21851 107 FR 108 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.406 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-35 | 11 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MQRNNTGMHA ACAACKHQRK KCSENCILAP YFPSNRSREF HAVHKVFGVS NITKLVKNAK 60 EEDRRRVVDS LIWEACCRQR DPIHGPYGEY TKVYNEYKKV LDELKRFRGQ NQLLQFPPLG 120 LKSVQDLIAC KGEHKAEVDN IALDNYLHGK KNGIIHDSDI YNTYCSNYLQ EFQNMRAEVV 180 IPFQQHSQPY YIAGINL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-21 | 4 | 116 | 4 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-21 | 4 | 116 | 4 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_21851 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-129 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020215386.2 | 1e-146 | LOB domain-containing protein 24 | ||||
TrEMBL | A0A151TP84 | 1e-147 | A0A151TP84_CAJCA; LOB domain-containing protein 2 | ||||
STRING | GLYMA12G14101.1 | 1e-124 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12722 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 5e-39 | LOB domain-containing protein 2 |