PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21801
Common NameKK1_022444
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 240aa    MW: 27489.8 Da    PI: 5.5871
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21801genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEde l  +v+++G  +W+  ++  g+ R++k+c++rw++yl
    C.cajan_21801 14 KGAWSREEDEMLRAYVHRYGHSNWRQLPKFAGLARCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding57.92.4e-1868112248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+ T+eE+++++++++++G++ W++Ia++++ gRt++++k++w+++l
    C.cajan_21801  68 GNYTPEEEQIIIKLHQKFGNK-WSLIAEKLP-GRTDNEVKNYWHSHL 112
                      789******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.867961IPR017930Myb domain
SuperFamilySSF466894.23E-3111108IPR009057Homeodomain-like
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002499.7E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-231568IPR009057Homeodomain-like
CDDcd001671.24E-101661No hitNo description
PROSITE profilePS5129426.89262116IPR017930Myb domain
SMARTSM007176.2E-1866114IPR001005SANT/Myb domain
PfamPF002494.5E-1768112IPR001005SANT/Myb domain
CDDcd001671.43E-1369112No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2769115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVRAPFYDKN GLKKGAWSRE EDEMLRAYVH RYGHSNWRQL PKFAGLARCG KSCRLRWLNY  60
LRPNLKHGNY TPEEEQIIIK LHQKFGNKWS LIAEKLPGRT DNEVKNYWHS HLKKNKEITI  120
SMPGDSLEGN LNETHQSEKS ECHGEDVGNN GFPHILESSL AMSTEKSSED NYSLTSNVAL  180
STIDNFLAKE DSVPPLASYE EFSGDFWTEP FLVQDTYIDD ICSGEDIALL VPNFDGTFLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251211425126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21801
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-44AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028234354.11e-135transcription factor MYB30-like
SwissprotQ9SJX86e-58MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A151TP311e-180A0A151TP31_CAJCA; Myb-related protein Myb4
STRINGXP_007132613.11e-107(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-60myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]