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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_21224 | ||||||||
Common Name | KK1_021853 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | bHLH | ||||||||
Protein Properties | Length: 469aa MW: 51695.2 Da PI: 6.8554 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.9 | 1.2e-10 | 346 | 387 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +Ka +L +AveYIk+Lq C.cajan_21224 346 SIAERVRRTKISERMRKLQDLVPNM--------DKANMLDLAVEYIKDLQ 387 689*********************7........6***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.998 | 340 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-13 | 343 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.11E-12 | 344 | 391 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-12 | 345 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-12 | 346 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-7 | 346 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MESDLQQHPP MFLDHHQQQM NSGLTRYRSA PSSYFSSIID REFYEHVFNR PSSPETERML 60 TRFVNSLGGG DADADAEDSL ATQNPPTVVA VKEEVNVNPQ PQDVPSMSNE PRVLQQQQQS 120 NINSYGSSAP HSFYQNTGRP PLPNQMKTGR GSSSSLIRHG SSPAGLFSNI NIETGYAAVR 180 GMGTMGAVSN TSEEANFSPA TGMKNAPNYA SGLMSSRAEI GNTSNAQNNA ENEGFAESQG 240 NEFIPGFPVG AWDDSTIMSD NMTGLKRFRE EDVKPFSGLN AAENQVECTV GSRNETGGQP 300 SSALAHQLSL PNTSAEMAAI EKFLQLSDSV PCKIRAKRGC ATHPRSIAER VRRTKISERM 360 RKLQDLVPNM DKANMLDLAV EYIKDLQKQV QIAKINTIQV LLSLVVKLDW PHVKNVFLHG 420 EFFLSQRKYA LDLLKETSLV ARSTTKPKLK GMVLGLCECL WLRLLLQDL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_21224 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031118 | 1e-119 | KT031118.1 Glycine max clone HN_CCL_179 bHLH transcription factor (Glyma11g13960.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020215254.1 | 0.0 | transcription factor bHLH122 | ||||
TrEMBL | A0A151TMG0 | 0.0 | A0A151TMG0_CAJCA; Transcription factor bHLH122 family | ||||
STRING | XP_007131988.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4185 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 1e-60 | bHLH family protein |