PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21165
Common NameKK1_021794
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 595aa    MW: 67661 Da    PI: 6.3393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21165genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.44.4e-1162275923373
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    +lL++cA+av+s d++ a+++L+++++++sp gd +qRla+yf+ +L++rla    ++ k +  +++s    ++ l+a++++  +sP++++s+++a
  C.cajan_21165 227 TLLTQCAQAVASYDQRTANEILKQIRQNSSPFGDGLQRLAHYFADGLETRLAA---GTPKFILFQSAS---AADMLKAYRVYITASPFHRMSNFLA 316
                    69**************************************************9...555555555555...899********************** PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    N++Il+ +++e+ +HiiDf+is+G+QWp+L++ L++R++gpp+lRiTg++ p++g   +e++eetg+rL+k+++++gvpfe+n  +a+++e+++le
  C.cajan_21165 317 NRTILKLAQNESSLHIIDFGISYGFQWPCLIHRLSEREGGPPKLRITGIDLPQPGfrPAERVEETGRRLEKYCQRFGVPFEYNC-LAQKWETIRLE 411
                    ******************************************************9*****************************.6********** PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                    +L++++ E+++Vn+ ++l++l de+v+ + +rd++L+l+++++P+++ +   +  +n++ Fl+rf eal ++salfd++ea++pre+  r + E+ 
  C.cajan_21165 412 DLKIDRSEVTVVNCLYRLKNLSDETVTANCPRDALLRLIRRINPNIFMHGVVNGTYNAPFFLTRFREALFHFSALFDMFEANVPREDPSRLMFEKG 507
                    ************************************************************************************************ PP

           GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    l+gr++ nv+acegaer+er et+++W+ r ++aGFk++pl  + ++ +k +++k + + + v+e+ +++++gWk+r L+++++W
  C.cajan_21165 508 LFGRDAINVIACEGAERFERPETYKQWQVRNQRAGFKQLPLAPDLVNRVKEMVKKEYHKDFVVDEDGKWVLQGWKGRILFATTSW 592
                    *********************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.758199573IPR005202Transcription factor GRAS
PfamPF035141.5E-113227592IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MEEEDDLERK PCMLQDCLRL QAAEKSFYDA LVQSHPSSPH EFRDDNPDPD DNFAGSGTTS  60
SESYSSYTTD NSCDSDWFNG SGDFEASFLQ RSLIDPFRET QAVVHLSNGA WNTIQSRNMP  120
RVFEEGVMHG SMTARGSREK RSHLMNDISH EEEERSTKLS AVSSDDSEPS SLFDEVLLCK  180
DGKSPAIFYA DREPSSAQIA DSGAKTTRSK KGSNKGTRAS TTVDLWTLLT QCAQAVASYD  240
QRTANEILKQ IRQNSSPFGD GLQRLAHYFA DGLETRLAAG TPKFILFQSA SAADMLKAYR  300
VYITASPFHR MSNFLANRTI LKLAQNESSL HIIDFGISYG FQWPCLIHRL SEREGGPPKL  360
RITGIDLPQP GFRPAERVEE TGRRLEKYCQ RFGVPFEYNC LAQKWETIRL EDLKIDRSEV  420
TVVNCLYRLK NLSDETVTAN CPRDALLRLI RRINPNIFMH GVVNGTYNAP FFLTRFREAL  480
FHFSALFDMF EANVPREDPS RLMFEKGLFG RDAINVIACE GAERFERPET YKQWQVRNQR  540
AGFKQLPLAP DLVNRVKEMV KKEYHKDFVV DEDGKWVLQG WKGRILFATT SWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5123159425380Protein SCARECROW
5b3h_A1e-5123159424379Protein SCARECROW
5b3h_D1e-5123159424379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21165
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214197.10.0scarecrow-like protein 14
SwissprotQ9XE581e-180SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A151TM790.0A0A151TM79_CAJCA; Scarecrow-like protein 14
STRINGGLYMA12G06630.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-174SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]