PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21002
Common NameKK1_021631
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family E2F/DP
Protein Properties Length: 332aa    MW: 37407.4 Da    PI: 5.5076
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21002genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-2757139271
        E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                    ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  C.cajan_21002  57 TGRGLRQFSMK---VCEKVESrGRTTYNEVADELVAEfsdpsntdltpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 139
                    689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.3E-1203332IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.2E-4652145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-3256139IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.72E-2159140IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.1E-2559139IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.72E-36144271IPR014889Transcription factor DP, C-terminal
SMARTSM011388.1E-55146330IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.35E-5146177No hitNo description
PfamPF087811.7E-29198280IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.39E-30198283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGDEEEEEAL PCVTTVSGQS ASATNALRKL NLLDIHADDA AGKKKKRGQR AVGPDKTGRG  60
LRQFSMKVCE KVESRGRTTY NEVADELVAE FSDPSNTDLT PDQQQYDEKN IRRRVYDALN  120
VLMAMDIISK DKKEIQWKGL PRTSVNDIEE LKTERLGLRN RIEKKTAYLQ ELEEQVNLDK  180
LLMFYVKFPL ANYLHYFVKF VGLQNLIQRN EQLYSSGNPP RGGVSLPFIL VQTGPHATVE  240
VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKFSEKPQDD NMILNLNDGG EGSSVSGLCQ  300
PQALPTILNV SNRSPTSPPL PGILKARVKQ EH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-3850145194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0942121e-165BT094212.1 Soybean clone JCVI-FLGm-18G24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214762.10.0transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-133DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A151TLT30.0A0A151TLT3_CAJCA; Transcription factor Dp-1
STRINGXP_007131528.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-124Transcription factor DP