PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_20892
Common NameKK1_021519
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NAC
Protein Properties Length: 390aa    MW: 45402.2 Da    PI: 6.4504
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_20892genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.34.8e-56241531129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++  ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++
  C.cajan_20892  24 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-DVIKDVDLYKIEPWDLQEicRIGTeEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIY 118
                    69****************************.9***************954555442556************************************* PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                    s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  C.cajan_20892 119 S-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 153
                    *.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-5920196IPR003441NAC domain
PROSITE profilePS5100558.28824196IPR003441NAC domain
PfamPF023659.3E-2925152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MKVSYLIQFN LQDSRDNMNT FTHVPPGFRF HPTDEELVDY YLRKKVASRR IDLDVIKDVD  60
LYKIEPWDLQ EICRIGTEEQ NEWYFFSHKD KKYPTGTRTN RATAAGFWKA TGRDKAIYSK  120
HDLIGMRKTL VFYKGRAPNG QKSDWIMHEY RLETDENGTP QASEFLNINS HKLIIVLSLT  180
WLKQEEGWVV CRVFKKRVTT MRKASEHDSP CWYEDQVSFM QDLDSPKQTS QSSLVYQIPY  240
PCKKELDFPY QLPRDHFLQL PLLESPKLLQ SSSTMNPNAV APYVIDHANH STMLPSSLIQ  300
EEQVGHQNFQ YGNNNSNEQV AVDQVTDWRV LDKFVASQLS HDASKDNIIF QGTDNGNVVQ  360
FRHLDKQEII MVPEENAPIS NSTCPIDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-482315214140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_20892
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215106.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-135NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A151TLH50.0A0A151TLH5_CAJCA; NAC domain-containing protein 7
STRINGGLYMA12G00760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-117NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]