PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_20860
Common NameKK1_021486
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family WRKY
Protein Properties Length: 195aa    MW: 22018.8 Da    PI: 8.4798
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_20860genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.3e-32104162159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  C.cajan_20860 104 LDDGYRWRKYGQKTVKNSIHPRSYYRCTHHTCNVKKQVQRLSKDTTIVVTTYEGIHNHP 162
                    59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-3390162IPR003657WRKY domain
SuperFamilySSF1182902.35E-2897163IPR003657WRKY domain
PROSITE profilePS5081128.87499164IPR003657WRKY domain
SMARTSM007746.6E-37104163IPR003657WRKY domain
PfamPF031061.3E-25105162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MESQQDPPQN SPLFPFTPES MMQNPLEPQG LHDDDIDWVN LFSGQNNFLG DAKAIMECTS  60
SSSSSSSCAL MAEKSDKEKG KGGRLKKTTQ PRFAFQTRSA DDILDDGYRW RKYGQKTVKN  120
SIHPRSYYRC THHTCNVKKQ VQRLSKDTTI VVTTYEGIHN HPCEKLMETL TPLLKQMQFL  180
SRLGSTNNAA PSSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2494161774Probable WRKY transcription factor 4
2lex_A3e-2494161774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_20860
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150424e-69AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020219778.11e-147probable WRKY transcription factor 43
SwissprotQ8VWQ43e-56WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A151UD121e-145A0A151UD12_CAJCA; Putative WRKY transcription factor 56
STRINGGLYMA16G03480.21e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.14e-58WRKY DNA-binding protein 56