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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_20790 | ||||||||
Common Name | KK1_021411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 290aa MW: 32312.6 Da PI: 9.4274 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.7 | 1.3e-13 | 17 | 61 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky C.cajan_20790 17 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 61 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-17 | 11 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.408 | 12 | 66 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.2E-18 | 15 | 64 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.3E-7 | 15 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-11 | 16 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-11 | 17 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.51E-8 | 19 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
ECPNKKLRKP YTITKSRESW TEQEHDKFLE ALQLFDRDWK KIEAFVGSKT VIQIRSHAQK 60 YFLKVQKNGT SEHVPPPRPK RKAAHPYPQK APKIAATASQ LTGSLQSPSA FVEPTYIYSS 120 DSSSVLGNPV TSMPLSSWNY NATPPPVNVP QPQVIRDGMG LTGAGQAVPH NCCYSSSNES 180 TPPTWPSSKT INQGDQGKPF KVMPDFAQVY SFLGSVFDPN STNHLHKLRQ MDPINVETVL 240 LLMRNLSINL MSPEFEDHKK LLSSYDTDSE KSKFVNICST NKSESAVLSA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_20790 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020215427.1 | 0.0 | protein REVEILLE 5 isoform X1 | ||||
Refseq | XP_029127919.1 | 0.0 | protein REVEILLE 5 isoform X2 | ||||
Swissprot | C0SVG5 | 1e-102 | RVE5_ARATH; Protein REVEILLE 5 | ||||
TrEMBL | A0A151UCW2 | 0.0 | A0A151UCW2_CAJCA; Myb-like protein G (Fragment) | ||||
STRING | GLYMA16G03640.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 1e-88 | MYB_related family protein |
Publications ? help Back to Top | |||
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