PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_19934 | ||||||||
Common Name | KK1_020521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NF-YA | ||||||||
Protein Properties | Length: 228aa MW: 25193.1 Da PI: 6.0191 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 49.3 | 1.6e-15 | 175 | 209 | 1 | 36 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +ksrk C.cajan_19934 175 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKSRK 209 69****************************.88887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.4E-8 | 173 | 220 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 17.558 | 174 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.3E-12 | 176 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 179 | 199 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MQSKSETANR LRSDPHTFQS GGVYSEPWWR GIGYNPLAQT MAGANASNSS SLECPNGDSE 60 SNEEGQSLSN SGMNEEDDDA TKDSQPAAPN EPGNYGQEQQ GMQHTASSAP SMREECLTQA 120 PQLELVGHSI ACATNPYQDP YYGGMMAAYG HQQMGYAPFI GMPHARMPLP LEMAQEPVYV 180 NAKQYQGILR RRQARAKAEL EKKLIKSRKV KCIRAIFNLS AYLFFFLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_19934 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020217843.1 | 1e-155 | nuclear transcription factor Y subunit A-1, partial | ||||
Refseq | XP_020234010.1 | 1e-155 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Refseq | XP_020234081.1 | 1e-155 | nuclear transcription factor Y subunit A-1 isoform X2 | ||||
Swissprot | Q9LXV5 | 6e-62 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A151UAM1 | 1e-170 | A0A151UAM1_CAJCA; Nuclear transcription factor Y subunit A-1 | ||||
STRING | GLYMA18G07890.2 | 1e-147 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4012 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 4e-66 | nuclear factor Y, subunit A1 |
Publications ? help Back to Top | |||
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