PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_19915 | ||||||||
Common Name | KK1_020502 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | HSF | ||||||||
Protein Properties | Length: 205aa MW: 23661 Da PI: 7.7684 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 105.8 | 3.6e-33 | 35 | 129 | 2 | 102 |
HHHHHHHHHC...TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl k+y++le e+ ++++sw+++g++fvv+ + ef++ Lp+yFkh+nf+SF+RQLn+YgFkk++++ weFkh++Fk+g +++l C.cajan_19915 35 FLLKTYDLLEegeAENSTKIVSWNAEGTAFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSKI---------WEFKHEKFKRGCRQML 121 9********9665567889***********************************************98765.........**************** PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 +i rkk C.cajan_19915 122 GEITRKKC 129 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.5E-34 | 27 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.2E-40 | 31 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.39E-28 | 32 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-29 | 35 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-11 | 35 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-11 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-11 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MDDHTNVLEL NLGLGSNLGG LHVGQSPRQR CPAPFLLKTY DLLEEGEAEN STKIVSWNAE 60 GTAFVVWSPA EFSELTLPRY FKHNNFSSFI RQLNTYGFKK TSSKIWEFKH EKFKRGCRQM 120 LGEITRKKCE PSVFPAYLKS CSEENATSST EDKNEQQLME ENKNLKKERL ELQMQIDECK 180 ALEIKLLACL SQFMDTHQNK VRKLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-16 | 12 | 127 | 3 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-16 | 12 | 127 | 3 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-16 | 12 | 127 | 3 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_19915 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020235512.1 | 1e-152 | heat shock factor protein HSF24 | ||||
TrEMBL | A0A151UAH3 | 1e-151 | A0A151UAH3_CAJCA; Heat shock factor protein HSF24 | ||||
STRING | GLYMA01G34490.1 | 1e-122 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 9e-37 | heat shock factor 4 |