PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_19583
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 549aa    MW: 60373.2 Da    PI: 5.1401
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_19583genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.18.7e-1391795431374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv++L++cAeav++++l+la+al++++  la++++ +m+++a+yf++ALa+r+++       a+p ++ + ++ s+ l++   f+e +P+lkf+h+
  C.cajan_19583 179 LVHTLMACAEAVQQKNLKLAEALVKHVGILAASQAGAMRKVAFYFAQALAHRIYG-------AFPEEPLD-SSFSDLLHM--HFYESCPYLKFAHF 264
                    689****************************************************.......66666665.345555555..6************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    taNqaIlea++++ rvH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+++++++l+++g +La++Ae++gv+fef+ +v+++l+dl+++
  C.cajan_19583 265 TANQAILEAFATAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGLKLAQLAETIGVRFEFRGFVCNSLADLDPN 360
                    ************************************************************************************************ PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres....eerik 284
                    +L+++pgEa+aVn+v++lhr+l++++s+e+    vL++vk+++Pk+++vveqea+hn++ Fl+rf+eal+yys+lfdsle + +++     ++++ 
  C.cajan_19583 361 MLEIRPGEAVAVNSVFELHRMLARPGSVEK----VLDTVKKIKPKIITVVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSSSSTGlgspSQDHL 452
                    ******************************....*********************************************9986666567789999* PP

           GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++++lgr+i+nvva eg +r+erhetl +Wr rl++ GF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  C.cajan_19583 453 MSEVYLGRQICNVVAYEGVDRVERHETLTQWRGRLGSGGFDPVHLGSNAFKQASTLLALFAgGDGYRVEENNGCLLLGWHTRPLIATSAWK 543
                    ******************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.5E-372188IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011298.8E-362194No hitNo description
PROSITE profilePS5098568.192153522IPR005202Transcription factor GRAS
PfamPF035143.0E-136179543IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MSNSSGKAKM WEEEQQQGGN DELLAALGYK VRSSDMADVA QKLEQLEMVM GSAQEEGISH  60
LASDTVHYDP TDLYSWVQTM LTELNPPPNN LDHLLIQDPI LTPSRVFNDD SEYDLRAIPG  120
IAAYPPQNTN NNIEEIEANN HNNNNNKRLK PSPIESTDSV SEPTRPVVLV DSQETGVRLV  180
HTLMACAEAV QQKNLKLAEA LVKHVGILAA SQAGAMRKVA FYFAQALAHR IYGAFPEEPL  240
DSSFSDLLHM HFYESCPYLK FAHFTANQAI LEAFATAGRV HVIDFGLKQG MQWPALMQAL  300
ALRPGGPPTF RLTGIGPPQP DNTDALQQVG LKLAQLAETI GVRFEFRGFV CNSLADLDPN  360
MLEIRPGEAV AVNSVFELHR MLARPGSVEK VLDTVKKIKP KIITVVEQEA NHNGPVFLDR  420
FTEALHYYSS LFDSLEGSSS STGLGSPSQD HLMSEVYLGR QICNVVAYEG VDRVERHETL  480
TQWRGRLGSG GFDPVHLGSN AFKQASTLLA LFAGGDGYRV EENNGCLLLG WHTRPLIATS  540
AWKLPSSES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-681635422377Protein SCARECROW
5b3h_D3e-681635422377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_19583
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214949.10.0DELLA protein GAI-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A1S3TQD80.0A0A1S3TQD8_VIGRR; DELLA protein GAI
STRINGXP_007163387.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein