PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_19191
Common NameKK1_019747
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 389aa    MW: 43676.1 Da    PI: 6.8278
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_19191genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.77.3e-31115218198
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                    f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + 
  C.cajan_19191 115 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElYRH 210
                    89***************************966778999*************************************************554777777 PP

                    ..EEEEE- CS
             B3  91 elvvkvfr 98 
                    +l++ ++r
  C.cajan_19191 211 RLYIDWRR 218
                    77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-41106205IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-29111203IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-27113202No hitNo description
SMARTSM010194.7E-22115216IPR003340B3 DNA binding domain
PROSITE profilePS5086313.987115215IPR003340B3 DNA binding domain
PfamPF023622.8E-28115219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MELMQEVKGY SDSREEEEEE EAAEEIITRE ESSRLLHQHQ DAAASNFIIN NHQHHQTTNQ  60
LDFMDLSLGS SKDEGNLQGS SGGGVYGHHH GSATASSSAN GNNLQQQPAE KEHMFDKVVT  120
PSDVGKLNRL VIPKQHAEKY FPLDSSTNEK GLLLNFEDRN GKLWRFRYSY WNSSQSYVMT  180
KGWSRFVKEK KLDAGDIVSF QRGVGELYRH RLYIDWRRRF YSLPSPTPPR HHHHDHLQQH  240
LNYNTTMSTP PSMPISDHQT LGTRQQQEGG NASLSPMIID SVPVAHNHHH HPYHGAKSGS  300
SASTSPSTAG KRLRLFGVNM ECASSTSEDP KCFSLLSSSS SVAHSPSLPP LQLLREDTLS  360
SSSSSARFGD QRGEPSMLFD LDPSLQYRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-641092192113B3 domain-containing transcription factor NGA1
5os9_B2e-641092192113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_19191
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-167AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211006.10.0B3 domain-containing protein Os03g0120900
RefseqXP_020211013.10.0B3 domain-containing protein Os03g0120900
RefseqXP_020211021.10.0B3 domain-containing protein Os03g0120900
SwissprotQ8LMR91e-76Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A151U8D90.0A0A151U8D9_CAJCA; B3 domain-containing protein Os03g0120900
STRINGXP_007135337.11e-178(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-68B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]