PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_18986 | ||||||||
Common Name | KK1_019538 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | GATA | ||||||||
Protein Properties | Length: 297aa MW: 32731.6 Da PI: 6.5093 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.7 | 7.8e-19 | 212 | 245 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g+ktLCnaCG++y++ + C.cajan_18986 212 CSHCQVQKTPQWRTGPLGPKTLCNACGVRYKSGR 245 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 5.1E-79 | 27 | 296 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.372 | 206 | 242 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.8E-15 | 206 | 260 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.42E-14 | 208 | 269 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-14 | 210 | 243 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 9.73E-14 | 211 | 268 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 212 | 237 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.4E-16 | 212 | 245 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MEVAVDKALK PSLRREFIVQ QTLCEEIFCL NANAGGAGAG EDFSVDDLLD FSNGEEYNEE 60 TESVSVSSQS QDRGEDDSNS NSTGVSCDSF FSTELAVPAG DLEDLEWVSH FVDDSLPELS 120 LLYPVRSEEA NRWVEPEASA KKTPRFPWEM KVRTKARTVR SRNPSAWPTL GPLLSLPSSP 180 SSCSSSVTEP PAKKQKKRAE AQPVGAQIQR RCSHCQVQKT PQWRTGPLGP KTLCNACGVR 240 YKSGRLFSEY RPACSPTFRS DIHSNSHRKV LEMRKRKGEA GPAATLAQAQ TQMVLTC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_18986 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020218869.1 | 0.0 | GATA transcription factor 7 | ||||
Refseq | XP_020218870.1 | 0.0 | GATA transcription factor 7 | ||||
TrEMBL | A0A151TD12 | 0.0 | A0A151TD12_CAJCA; GATA transcription factor | ||||
STRING | GLYMA06G01110.1 | 1e-151 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 7e-47 | GATA transcription factor 7 |