PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18647
Common NameKK1_019191
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB_related
Protein Properties Length: 90aa    MW: 10411.6 Da    PI: 8.9026
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18647genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09753347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+   +++ +a + +  +   +W + ar +g g+t +++k ++ k+
    C.cajan_18647  7 GWTPKQNKRFENALAIFDQDtpdRWQKLARAVG-GKTVEEVKRHYEKL 53
                     5*****************99*************.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.06358IPR017884SANT domain
SMARTSM007173.3E-7456IPR001005SANT/Myb domain
SuperFamilySSF466897.91E-13662IPR009057Homeodomain-like
PfamPF002491.5E-6753IPR001005SANT/Myb domain
CDDcd001672.13E-6854No hitNo description
Gene3DG3DSA:1.10.10.604.7E-4858IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASSQQGWTP KQNKRFENAL AIFDQDTPDR WQKLARAVGG KTVEEVKRHY EKLVEDVKKI  60
EEGHVPLPNY RNVATVGTST RGYSYMDEER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-27190186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_18647
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354001e-64AC235400.1 Glycine max strain Williams 82 clone GM_WBb0120P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220023.17e-63protein RADIALIS-like 4
SwissprotF4JVB83e-32RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A151TC053e-61A0A151TC05_CAJCA; DnaJ isogeny subfamily C member 2
STRINGXP_007136596.17e-51(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-34RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]