PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB

Protein Properties

Length: 300aa MW: 33580.6 Da PI: 7.8279

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_18476	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3.2e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ +k+ Gg+ +W++ +r+ g+ R++k+c++rw +yl C.cajan_18476 14 KGPWTAEEDEILASFIKKNGGHgSWRSLPRMAGLLRCGKSCRLRWTNYL 62 79*****************9*******99**********97 PP
2	Myb_DNA-binding	48.1	2.7e-15	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++l ++++ lG++ W++Ia+ ++ gRt++++k+ w+++l C.cajan_18476 68 RGPFTLEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-21	5	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.981	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	8.24E-28	11	109	IPR009057	Homeodomain-like
SMART	SM00717	8.1E-12	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-14	14	62	IPR001005	SANT/Myb domain
CDD	cd00167	3.24E-8	16	62	No hit	No description
PROSITE profile	PS51294	24.539	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-25	66	118	IPR009057	Homeodomain-like
SMART	SM00717	3.0E-14	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-14	68	113	IPR001005	SANT/Myb domain
CDD	cd00167	4.50E-10	70	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0009909	Biological Process	regulation of flower development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGRTPCCDKK GLKKGPWTAE EDEILASFIK KNGGHGSWRS LPRMAGLLRC GKSCRLRWTN 60 YLRPDIKRGP FTLEEEKLVI QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLKSM 120 GLDPKTHEPL ASSSYPFHKA PASVSTRHMA QWESARLEAE ARLSNESSRL TNHSSLADIN 180 KTTDSDYFLR IWNSEVGEAF RNVRHKGENK VTSSCHSPLS AGSSSNKCES VATNAELASN 240 AQDTPENTMK EELEWRTRGS DSSSSNDMED SSDTALQLLL DFPINNDMSF LEENSFVCPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-26	12	117	5	108	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKRLKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269\|PubMed:19232308, ECO:0000269\|PubMed:21750030}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00114	ampDAP	Transfer from AT3G61250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_18476

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-155	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020219251.1	0.0	transcription factor MYB41
Swissprot	Q9M2D9	1e-124	MYB17_ARATH; Transcription factor MYB17
TrEMBL	A0A151TBJ1	0.0	A0A151TBJ1_CAJCA; Protein ODORANT1
STRING	GLYMA09G39721.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2331	32	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-120	myb domain protein 17