![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_18311 | ||||||||
Common Name | KK1_018846 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 308aa MW: 34993.7 Da PI: 10.3259 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.8 | 1.2e-13 | 37 | 81 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT +E++++++a +++ + Wk+I + +g +t q++s+ qky C.cajan_18311 37 RENWTDQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 81 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.09E-16 | 31 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.797 | 32 | 86 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.4E-17 | 35 | 84 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.0E-6 | 35 | 87 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-11 | 36 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-11 | 37 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.12E-8 | 39 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 308 aa Download sequence Send to blast |
MVSLNPNPPQ TFHFFDTFNM EVPNKKIRKP YTITKSRENW TDQEHDKFLE ALHLFDRDWK 60 KIEAFVGSKT VIQIRSHAQK YFMKVQKNGT SEHVPPPRPK RKAAHPYPQK ASKNALTIPQ 120 VKRPLQSSSS LSESSYIYRP DSSSVLRTPV SSVPLPSWNY NVTPPVSLPQ VTKDDRMLSQ 180 QAIPFNHCYS SSNESTPRGW PSSKHTDQAD QGKPIKVMPD FAQVYSFIGS VFDPKATNHL 240 QTLKQMDPIN VETVLLLMRN LSTNLRSPEF ENDKRLLSSY NANLEKGKSG SHLRNSLTGR 300 SESAVLTA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_18311 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020219104.1 | 0.0 | protein REVEILLE 6 | ||||
Swissprot | C0SVG5 | 4e-99 | RVE5_ARATH; Protein REVEILLE 5 | ||||
TrEMBL | A0A151TB74 | 0.0 | A0A151TB74_CAJCA; Myb-like protein G | ||||
STRING | GLYMA18G47230.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01280.1 | 2e-85 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|