PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_17676 | ||||||||
Common Name | KK1_018199 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 394aa MW: 44374.3 Da PI: 5.4163 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3.2e-18 | 65 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p + g k r +lg+f ta eAa a+++a+k+++g C.cajan_17676 65 CKFRGVRQRI-WGKWVAEIREPIN-GklvgeKANRLWLGTFSTAHEAALAYDEAAKAMYG 122 79*****998.**********855.55976666************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.47E-32 | 65 | 131 | No hit | No description |
Pfam | PF00847 | 1.6E-13 | 65 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-28 | 66 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-36 | 66 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-18 | 66 | 132 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.641 | 66 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-9 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-9 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
ERKSRKRRSG VSDSVEDTLE KWKEYNRKQQ LGCRENGVEV IHKVPAKGSR KGCMRGKGGP 60 QNSDCKFRGV RQRIWGKWVA EIREPINGKL VGEKANRLWL GTFSTAHEAA LAYDEAAKAM 120 YGPCARLNFP ESNGSSLSSS GCDQKSPTAS EVGDFEEETE EKPCVADESI EELKEMVTTG 180 FEHQTSEECK VMSLSSVVKS QGFGRELEEV VRNLGEEGNQ LQKEPMDIRD DYCSSFDAAE 240 HEILVKSEET RGESVESFRS YSNPRPNSEA CVAKKNTEEV ISEILGLCHS KCLEMTPNEQ 300 YRNGDSNHPS MESMSQVEAL NNINNTNRNS LHGFSSGHSR KLCDLSQQLH KHRNNMQFAE 360 LEVGYDYSFL RPDYDFGLLE EKKLLDVCFP RIGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-16 | 67 | 130 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 8 | SRKRRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_17676 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX440388 | 1e-155 | JX440388.1 Glycine max DRE-binding protein 2D;1 (DREB2D;1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020219847.1 | 0.0 | dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A0A151T981 | 0.0 | A0A151T981_CAJCA; Dehydration-responsive element-binding protein 2A (Fragment) | ||||
STRING | XP_007140202.1 | 1e-180 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13286 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38340.1 | 3e-33 | ERF family protein |