PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_17249
Common NameKK1_017760
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 535aa    MW: 61639.6 Da    PI: 8.7722
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_17249genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07382423240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W +eE ell ++ +++++g   +W+ I++++g+gR+ +++
    C.cajan_17249 382 KPWNKEEIELLRKGMQKFPKGtsrRWEVISEYIGTGRSVEEI 423
                      69************************************9987 PP
2Myb_DNA-binding26.71.3e-08478522345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++++ ++ g+t +qck ++ 
    C.cajan_17249 478 VWSAVQERALVQALKAFPKEtsqRWERVSAAVP-GKTVNQCKKKFA 522
                      7********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006255.7E-94866IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.2E-2091197IPR001623DnaJ domain
SuperFamilySSF465652.09E-1993201IPR001623DnaJ domain
SMARTSM002713.2E-1394169IPR001623DnaJ domain
PROSITE profilePS5007617.99995177IPR001623DnaJ domain
CDDcd062573.74E-1295166IPR001623DnaJ domain
PfamPF002263.7E-1795174IPR001623DnaJ domain
PRINTSPR006255.7E-9118133IPR001623DnaJ domain
PRINTSPR006255.7E-9149169IPR001623DnaJ domain
PROSITE patternPS006360154173IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.7E-4377424IPR009057Homeodomain-like
PROSITE profilePS512936.942379434IPR017884SANT domain
SMARTSM007172.8E-6380433IPR001005SANT/Myb domain
PfamPF002492.2E-6382423IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-7382426IPR009057Homeodomain-like
CDDcd001676.82E-5383425No hitNo description
PROSITE profilePS512939.436474529IPR017884SANT domain
SMARTSM007176.1E-9475527IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-8477531IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-5477522IPR009057Homeodomain-like
PfamPF002494.1E-7478524IPR001005SANT/Myb domain
CDDcd001675.31E-6479525No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MAVYTKFRLI AYSQEIVDGQ PIFVSSNCLP IKALKYEPAG HSFHSAALKL LGVQEDKNDA  60
DDKKVADDKE QTYLPSDSYS SKSKKKSGTG DKQQDHYALL GLGHLRYLAT EDQIRKSYRE  120
TALRFHPDKQ AALLLAEETE AAKQAKKDEI ESHFKAIQEA YEVLIDPVKR RIYDSTDEFD  180
DEIPTDCAPQ DFFKVFGPAF MRNGRWSVNQ PIPSLGDDNT SLKDVDNFYN FWYSFKSWRE  240
FPHADEFDLE QAESRDHKRW MERQNAKLTE KARKEDYARI QEERQRKVEE ERQAAEAALQ  300
QKKVKEKEKK LLRKERARLR TLSGPILSQH LLDISDDDVE RLCMSLDIEK LRSLCENMEG  360
RQVLLEQAKV LRDALSSKKE EKPWNKEEIE LLRKGMQKFP KGTSRRWEVI SEYIGTGRSV  420
EEIMKATKTV LLQKPDSSKA FDTFLEKRKP GAQSIDKSTD NQNSTSANGV PSSSEQDVWS  480
AVQERALVQA LKAFPKETSQ RWERVSAAVP GKTVNQCKKK FAMMKESFRN KKTAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A3e-1819129120120Zuotin
5dje_B3e-1819129120120Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_17249
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220777.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A151T8220.0A0A151T822_CAJCA; DnaJ isogeny subfamily C member 2
STRINGXP_007148540.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-118DnaJ domain ;Myb-like DNA-binding domain