PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_17157 | ||||||||
Common Name | KK1_017666 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 189aa MW: 21847.3 Da PI: 4.9268 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 122.2 | 4.7e-38 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrF Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ ++ ae ++wy++s+r +nr+t +gyWk tg +++v+s C.cajan_17157 8 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLEVYPYDPWELDGRALAEGNQWYYYSRRT--------QNRVTGNGYWKPTGMEEPVVSGt 94 79*************************999.99**************977778899******984........58******************986 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kk +vf+ g+a g kt+W+m+eyrl C.cajan_17157 95 NNKRVGMKKYFVFHVGEAAAGIKTNWIMQEYRL 127 7788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-50 | 6 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.693 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-23 | 9 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MGDSNVNLPP GFRFYPTDEE LVVHFLHRKA SLLPCHPDVI PDLEVYPYDP WELDGRALAE 60 GNQWYYYSRR TQNRVTGNGY WKPTGMEEPV VSGTNNKRVG MKKYFVFHVG EAAAGIKTNW 120 IMQEYRLSDS ASSTRSSKRK SQQKMDYNKW VICRVYERNG DDDNGTELSC LDEVFLSLDD 180 DFDEISLPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-42 | 4 | 159 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-42 | 4 | 159 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-42 | 4 | 159 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-42 | 4 | 159 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-42 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 8e-42 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 8e-42 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 8e-42 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 8e-42 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 8e-42 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 8e-42 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 8e-42 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 9e-42 | 4 | 159 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 9e-42 | 4 | 159 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_17157 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU661918 | 1e-155 | EU661918.1 Glycine max NAC domain protein (NAC18) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020221468.1 | 1e-142 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 3e-83 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A151T7W2 | 1e-140 | A0A151T7W2_CAJCA; NAC domain-containing protein 68 | ||||
STRING | GLYMA08G19300.1 | 1e-124 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 5e-83 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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