PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_17062
Common NameKK1_017567
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 945aa    MW: 105239 Da    PI: 7.9709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_17062genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.81.9e-18409508198
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    f+k+l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++l
  C.cajan_17062 409 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGRL 502
                    99**************************555566778***************9989999999***9.********************766.67767 PP

                    EEEEE- CS
             B3  93 vvkvfr 98 
                    v+++++
  C.cajan_17062 503 VMGFRK 508
                    777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-30406511IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-20406508IPR015300DNA-binding pseudobarrel domain
CDDcd100179.28E-22407508No hitNo description
PfamPF023621.6E-15409508IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138409510IPR003340B3 DNA binding domain
SMARTSM010194.4E-21409510IPR003340B3 DNA binding domain
PROSITE profilePS5105014.254659709IPR011124Zinc finger, CW-type
PfamPF074966.3E-13664706IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 945 aa     Download sequence    Send to blast
MNSNNNNYCY FLKPRFFSHL KNTHCYSLLS LSKTLFLFSL YFHSFSLIAD QAVALVDSFR  60
FGFAMASASS SSSKLCFNSD CKELKPERPK KGWRLRSGEL AELCDRCGSA FEEGRFCEIF  120
HSSASGWRSC ETCRKRIHCG CIVSSHAFVL LDPGGIECFA CARKNFILVI TIFCYLSQPS  180
NLPWPQSFSL QSRISDRLRD LSAKGWTQLA GSGPVPWKQA PSLFNSASSS DMLPDVPSLV  240
ELSNSFDKMY CNERLPSSTL EKKNEDLSGM SVNWSVKLGS REMMLMNGMR NEDKSSSCLN  300
MCPQPPLKEE SSPQPFGLPV PNSCQNERNG QLGVTGSQPQ QTPPPPGKQF NGNMHLAPDS  360
SCEAQIRNGR PRADARGRNQ LLPRYWPRCT DLELQQISID SNSVITPLFQ KTLSASDAGR  420
IGRLVLPKKC AETYFPPISQ PEGLPLKILD AKGKEWIFQF RFWPNNNSRM YVLEGVTPCI  480
QSMQLQAGDT VTFSRLEPEG RLVMGFRKAS SAVPSDQIFN TSHIYLLSGE NLNLCAYFSV  540
CRTMKPIRLE MDFLHMVELA DPNSWSKVDK SGYIAKEALG SKSLISRKRK SSILGSKSKR  600
LKIENEDLIE LKITWQEAQG LLRPPPSHLP SIVVIEGFEF EEYEAPVLGK PTIFTSDNVG  660
DKIQWAQCED CLKWRKLPAS ELLPSKWTCS DNSWDPERSS CSVAQELTAE QLENLLPPCN  720
SAVSKKMKAA KQDPDNAEAL EGLDTLANLA ILGEGEALPA SAQATTKHPR HRPGCSCIVC  780
IQPPSGKGPK HKQTCTCNVC LTVKRRFRTL MLRREKKQSE KEAETTRKKQ QQQHPQPLPS  840
PEILLDEDSL PCSNTGQIDL NIQPEREEEL SPGSDSGGMM KLLHDATERY LKQQTVNLGT  900
GDSSGSQSQL VVDGMREEKL SNGVAHGSSS HNADKEHVQS LSMNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A8e-623875122127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1585590SRKRKS
2587601KRKSSILGSKSKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_17062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-151AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020221954.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A151T7I80.0A0A151T7I8_CAJCA; B3 domain-containing protein Os07g0563300 family
STRINGGLYMA13G31970.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-157HSI2-like 1