PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_17016 | ||||||||
Common Name | KK1_017521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 38443 Da PI: 9.4189 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171 | 3.8e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeelvv+yLk+k+++ +l++ +i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ C.cajan_17016 15 LPPGFRFHPTDEELVVHYLKRKANSVPLPV-AIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAASSGYWKATGTDKPILTSn 109 79****************************.88***************8888999*************************************9986 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl C.cajan_17016 110 GHHKVGVKKALVFYGGKPPKGVKTSWIMHEYRL 142 7778***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-64 | 8 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.385 | 15 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MDSSSGSESQ QHPQLPPGFR FHPTDEELVV HYLKRKANSV PLPVAIIADV DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGARPNRA ASSGYWKATG TDKPILTSNG HHKVGVKKAL 120 VFYGGKPPKG VKTSWIMHEY RLLGNSSNPS SLLPSDHAHS NKKTSLRLDD WVLCRIYKKS 180 NSTILPRLPS MIEQNKEAST ESTMLPMMST LSMANNNTPQ NSNPTSSRSA SYGHQLALDQ 240 NDDNFFDGIL GVDQSMQQHV SDAKGNFPVK RAHEFWNDTG SSSSSRLRRF HCDLNTVEEN 300 SSFVSLLSHL PQNTTFHPNA LLGPVGTGVL RQQQFQLPSM NWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-72 | 15 | 183 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-72 | 15 | 183 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-72 | 15 | 183 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-72 | 15 | 183 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-72 | 15 | 183 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-72 | 15 | 183 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-72 | 15 | 183 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-72 | 15 | 183 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-72 | 15 | 183 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-72 | 15 | 183 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-72 | 15 | 183 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-72 | 15 | 183 | 20 | 172 | NAC domain-containing protein 19 |
3ulx_A | 1e-72 | 1 | 182 | 1 | 171 | Stress-induced transcription factor NAC1 |
4dul_A | 1e-72 | 15 | 183 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-72 | 15 | 183 | 17 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_17016 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 5e-85 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020221384.1 | 0.0 | NAC transcription factor 25 | ||||
Swissprot | Q8GY42 | 1e-107 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A151T7D2 | 0.0 | A0A151T7D2_CAJCA; NAC domain-containing protein 18 | ||||
STRING | XP_007148205.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1623 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-105 | NAC domain containing protein 25 |