PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_16936

Common Name

KK1_017439

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C3H

Protein Properties

Length: 469aa MW: 49296.1 Da PI: 8.384

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_16936	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.9	1.2e-11	43	68	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C +G+rC+F+H++ C.cajan_16936 43 DEADCTYYLRTGFCGFGSRCRFNHPR 68 6799********************96 PP
2	zf-CCCH	35.4	1.8e-11	89	113	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rt tCk+G++Ck++H++ C.cajan_16936 89 QPVCQYYMRTRTCKFGSSCKYHHPR 113 689********************96 PP
3	zf-CCCH	37	5.7e-12	134	158	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G++CkF+H+ C.cajan_16936 134 DEKECSYYVKTGQCKFGATCKFHHP 158 6789********************9 PP
4	zf-CCCH	32.2	1.9e-10	348	371	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ++a+ G Ck+G+ CkF H++ C.cajan_16936 348 PACTHYAQHGACKFGSACKFDHPM 371 78********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	7.1E-5	41	68	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.652	41	69	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-6	43	70	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.5E-9	43	68	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-5	47	68	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6E-4	86	113	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.756	86	114	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-9	89	113	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-6	89	114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-4	91	113	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.746	132	160	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-6	133	159	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.7E-6	134	159	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-9	134	158	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.5E-4	138	157	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.6E-6	344	371	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.22	344	372	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.9E-8	347	371	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-5	348	372	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MEQYGRSSEG SRSDPSAEWA GAEEGMWQLG LGAAEESYPQ RPDEADCTYY LRTGFCGFGS 60 RCRFNHPRDR AAVVGAERAA GDYPERVGQP VCQYYMRTRT CKFGSSCKYH HPRQAGAAAT 120 PVSLNYYGYP LRPDEKECSY YVKTGQCKFG ATCKFHHPVP AGVQIPAPSP VAPISPLPVP 180 VPSPLYSTMQ PPPGPSSQQI GVLVARPPML PGSLVQSLYG PVVVSPAMVP FSGWGPYQAS 240 ATSPVLPSGT PSNVGSTQLY GITQLPSSAA AYPGPYQPSG SSVGPSSSSQ KEQAFPERSN 300 QPEYRYYPKT GEVKFGPSYR YHPPPDTSAP KANVVLSSAG LPLRPGAPAC THYAQHGACK 360 FGSACKFDHP MGSPSYSPSA SSMADMAVAA YHVGSTISTV APSSLSELRP ELSSGPSKDS 420 VPSRMLSSTG MLTGGPVSQS STQSSSQSSG PLAAPVTTAT SSNVPHTSS

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MEQYGRSSEG SRSDPSAEWA GAEEGMWQLG LGAAEESYPQ RPDEADCTYY LRTGFCGFGS  60
RCRFNHPRDR AAVVGAERAA GDYPERVGQP VCQYYMRTRT CKFGSSCKYH HPRQAGAAAT  120
PVSLNYYGYP LRPDEKECSY YVKTGQCKFG ATCKFHHPVP AGVQIPAPSP VAPISPLPVP  180
VPSPLYSTMQ PPPGPSSQQI GVLVARPPML PGSLVQSLYG PVVVSPAMVP FSGWGPYQAS  240
ATSPVLPSGT PSNVGSTQLY GITQLPSSAA AYPGPYQPSG SSVGPSSSSQ KEQAFPERSN  300
QPEYRYYPKT GEVKFGPSYR YHPPPDTSAP KANVVLSSAG LPLRPGAPAC THYAQHGACK  360
FGSACKFDHP MGSPSYSPSA SSMADMAVAA YHVGSTISTV APSSLSELRP ELSSGPSKDS  420
VPSRMLSSTG MLTGGPVSQS STQSSSQSSG PLAAPVTTAT SSNVPHTSS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_16936

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	1e-101	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020220677.1	0.0	zinc finger CCCH domain-containing protein 34
Swissprot	Q6NPN3	1e-138	C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBL	A0A151T753	0.0	A0A151T753_CAJCA; Zinc finger CCCH domain-containing protein 58
STRING	GLYMA15G10230.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF983	34	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	1e-118	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]