PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_16397 | ||||||||
Common Name | KK1_016879 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 110aa MW: 13211.1 Da PI: 9.0598 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.7e-18 | 16 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g++ AeIrdp++ r +lg+f+taeeAa+a+++a+ l+g C.cajan_16397 16 RYRGVRKRP-WGKYGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDRAAIGLRG 66 6********.**********97744...688*******************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-22 | 16 | 75 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.33E-27 | 16 | 75 | No hit | No description |
SMART | SM00380 | 3.2E-33 | 16 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.301 | 16 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-30 | 16 | 76 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-11 | 16 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MEEAHKDKER EGEEVRYRGV RKRPWGKYGA EIRDPTKPTG RQWLGTFDTA EEAARAYDRA 60 AIGLRGALAI LNFPNEYYPH LTIYIYIYIY IYILLSYIYV RFSNFYFYLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-26 | 13 | 77 | 11 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_16397 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT091458 | 9e-72 | BT091458.1 Soybean clone JCVI-FLGm-8C21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020220196.1 | 3e-54 | ethylene-responsive transcription factor ERF098 | ||||
Swissprot | Q9LTC5 | 1e-32 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A151T5N0 | 8e-74 | A0A151T5N0_CAJCA; Ethylene-responsive transcription factor ERF098 family | ||||
STRING | GLYMA15G17090.1 | 6e-45 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 3e-12 | ERF family protein |
Publications ? help Back to Top | |||
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