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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_16144 | ||||||||
Common Name | KK1_016619 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 30827.3 Da PI: 8.4576 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9.2e-18 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr++ +g+WvAeI+d + ++ r +lg++ taeeAa+a+++a+ l+g C.cajan_16144 34 KYVGVRQRA-SGKWVAEIKDTT---QKIRMWLGTYETAEEAARAYDEAACLLRG 83 8*****999.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.1E-34 | 34 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-27 | 34 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.388 | 34 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-19 | 34 | 92 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-12 | 34 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.46E-31 | 34 | 90 | No hit | No description |
PRINTS | PR00367 | 1.3E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-7 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MEIQFQHPKQ HLKPNKSSKG GKLKGRKNNR NKNKYVGVRQ RASGKWVAEI KDTTQKIRMW 60 LGTYETAEEA ARAYDEAACL LRGSNTRTNF LTRVSLDSPL ASRIQNLLNT RKGSKTKQHE 120 QDAQTCATRK KRRVNNTSSS SSTSSNSANS SNSETCEYSL SSETTTQHTQ LFDDAYRPDL 180 SDFMESESGS EKNPSWGFEA VFDRFPFKQV MDIANLPDLD GLELPEFERM KVERQISASL 240 YAMNGVQEYM DTVQDSNSES LWDLSPLCSF LC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 25 | 100 | 5 | 81 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_16144 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092344 | 1e-104 | BT092344.1 Soybean clone JCVI-FLGm-15F24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029128427.1 | 1e-176 | ethylene-responsive transcription factor ERN1 | ||||
Swissprot | A0A1X9PY88 | 1e-106 | ERN1_LOTJA; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A151T4X9 | 0.0 | A0A151T4X9_CAJCA; Ethylene-responsive transcription factor RAP2-11 | ||||
STRING | XP_007151856.1 | 1e-123 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3341 | 30 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-23 | related to AP2 11 |
Publications ? help Back to Top | |||
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