![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_15977 | ||||||||
Common Name | KK1_016444 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 291aa MW: 32228.8 Da PI: 9.7826 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.5 | 1.3e-12 | 54 | 98 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky C.cajan_15977 54 RENWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 98 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.29E-16 | 48 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.143 | 49 | 103 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.7E-18 | 52 | 101 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.4E-6 | 52 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-10 | 53 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-10 | 54 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.70E-8 | 56 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MVSKNPNPPE GFYLDPTGMA LSGMPPFASV SAAANSPEDA AKKIRKPYTI TKSRENWTEP 60 EHDKFLEALQ LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KVQKSGTSEH LPPPRPKRKA 120 AHPYPQKASK NAPVLSQVSG SLQSSPALLE PGCILKNDSS PMLKSPIMNT VVSSWSNNTL 180 QAINLSPVAK VNICSSGEST PKVRPVGESN GQGNKIHPLR VLPDFTQVYG FIGSVFDPNA 240 TEHLQKLKEM DRIDVETVLL LMRNLSINLT SPDFEDHRKV LSSYEVEARE K |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_15977 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT093234 | 0.0 | BT093234.1 Soybean clone JCVI-FLGm-17C23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020221987.1 | 0.0 | protein REVEILLE 6 | ||||
Swissprot | Q8H0W3 | 1e-120 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A151T4G0 | 0.0 | A0A151T4G0_CAJCA; Myb-like protein G | ||||
STRING | GLYMA16G29740.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52660.2 | 1e-103 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|