PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_15921 | ||||||||
Common Name | KK1_016386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 34008.5 Da PI: 7.0026 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170 | 7.7e-53 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv++yL++k++g+++ + vikevd+yk++Pw+Lp++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + C.cajan_15921 7 LPPGFRFHPTDEELVNHYLCRKCAGQPIAV-PVIKEVDLYKFDPWQLPEMGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGK-- 99 79**************************99.89***************54445799************************************98.. PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kk Lvfy g+apkg+kt+W+mheyrl C.cajan_15921 100 PKALGIKKALVFYAGKAPKGVKTNWIMHEYRL 131 778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-63 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.773 | 7 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-28 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MKGEIELPPG FRFHPTDEEL VNHYLCRKCA GQPIAVPVIK EVDLYKFDPW QLPEMGFYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGKP KALGIKKALV FYAGKAPKGV 120 KTNWIMHEYR LANVDRSASK KNNNLRLDDW VLCRIYNKKG KIEKYNTGAP KMNHGVVHNF 180 EHEKENENET KPEIHKLGME QLYMDTSDSV PRLHTDSSCS EHVVSPDVTC EREVQSEPKW 240 NDLDLQIENP FDFQFNYFDN NISVDDPFGN QVQYQMGQLS PLQDMFMYLQ KPY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-83 | 2 | 164 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_15921 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031208 | 0.0 | KT031208.1 Glycine max clone HN_CCL_154 NAC transcription factor (Glyma04g38560.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020220700.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-130 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A151T497 | 0.0 | A0A151T497_CAJCA; NAC domain-containing protein 2 | ||||
STRING | GLYMA04G38560.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-129 | NAC family protein |