PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_15712 | ||||||||
Common Name | KK1_016174 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 180aa MW: 20094.1 Da PI: 9.2426 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.6 | 5e-21 | 12 | 57 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+ELS+LC+ae+a+++fs +k y + C.cajan_15712 12 KDPNTRQVTFSKRRTGLFKKANELSILCGAEIAILVFSIGNKPYSF 57 66778*********************************98887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 8.24E-27 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.254 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.10E-32 | 2 | 72 | No hit | No description |
PRINTS | PR00404 | 1.5E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-23 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MGRRKIEIAT VKDPNTRQVT FSKRRTGLFK KANELSILCG AEIAILVFSI GNKPYSFGHP 60 SVEAVVAKYL PHATLSNDVQ QNNPSNEFGD IDGLNQQLSK VQAQILDEEK KGAELDEMLK 120 QLQVTQLSQC KELQGSFLKL QCRVKDYIDA IQVSECMMLL AQGPQIGITN QVTTKKRRNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 6e-19 | 1 | 79 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 6e-19 | 1 | 79 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 6e-19 | 1 | 79 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 6e-19 | 1 | 79 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_15712 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020221887.1 | 1e-131 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A151T3N8 | 1e-130 | A0A151T3N8_CAJCA; Agamous-like MADS-box protein AGL61 | ||||
STRING | GLYMA05G35820.1 | 3e-96 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 5e-35 | AGAMOUS-like 29 |