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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_15708 | ||||||||
Common Name | KK1_016170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19429.6 Da PI: 10.2486 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.1 | 7.5e-21 | 11 | 57 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +++ +qvtfskRr+g++ KA+ELS+LC++e+a+i+fs+ +k y + C.cajan_15708 11 VKDPNTKQVTFSKRRTGLFRKANELSILCGIEIAIIVFSPGNKPYSF 57 5677789*********************************9998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 7.06E-27 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.016 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.0E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-23 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGRRKIEIKE VKDPNTKQVT FSKRRTGLFR KANELSILCG IEIAIIVFSP GNKPYSFGHP 60 SVDAVTAKFL QQEPKSNNEV GHDIDMETLN KQLFDVQAQI RKEQKKAAKL DARMKQHKVT 120 QLSHQQLKDS FSELQYNVKD YIDAIEVSEC MMLLAKEPVV GIKKQVSKKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-18 | 1 | 92 | 1 | 91 | MEF2C |
5f28_B | 1e-18 | 1 | 92 | 1 | 91 | MEF2C |
5f28_C | 1e-18 | 1 | 92 | 1 | 91 | MEF2C |
5f28_D | 1e-18 | 1 | 92 | 1 | 91 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_15708 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 4e-56 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020220161.1 | 1e-123 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A151T3N9 | 1e-122 | A0A151T3N9_CAJCA; Agamous-like MADS-box protein AGL62 | ||||
STRING | GLYMA05G35820.1 | 7e-77 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-34 | AGAMOUS-like 29 |