PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

bHLH

Protein Properties

Length: 343aa MW: 37474.9 Da PI: 5.4281

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_15679	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00043	208	246	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq C.cajan_15679 208 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 246 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.35	196	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.43E-6	206	250	No hit	No description
SuperFamily	SSF47459	4.84E-10	206	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-7	210	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MNRGVLQSSP VQQMMAGNPN NWWNINTPPP PPPPQPPQPS PPFFSTPSNF LTPYNPTSSL 60 PLPSWLDNNQ DLPESWSQLL MSGILVPEEE KGSMCQVESK KLENWEEQML SQAPSASIKQ 120 ESSVNSYVYG HGNEEFQAAK PTWSQIVPSS SPKSSVTSFS SSMLDFSNTD ARPPPPDPSS 180 ECNSSAAGGA FKKARVQPTT TQSTFKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG 240 YIRFLQSQIE ALSLPYLGSG SGNMRHQQSV QGEKNCIFPE DPGQLVNENC LKRKAASEQD 300 SQEEPKKDLK SRGLCLVPVS CTLQVGSENG ADYWSHAFGG GFR

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MNRGVLQSSP VQQMMAGNPN NWWNINTPPP PPPPQPPQPS PPFFSTPSNF LTPYNPTSSL  60
PLPSWLDNNQ DLPESWSQLL MSGILVPEEE KGSMCQVESK KLENWEEQML SQAPSASIKQ  120
ESSVNSYVYG HGNEEFQAAK PTWSQIVPSS SPKSSVTSFS SSMLDFSNTD ARPPPPDPSS  180
ECNSSAAGGA FKKARVQPTT TQSTFKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG  240
YIRFLQSQIE ALSLPYLGSG SGNMRHQQSV QGEKNCIFPE DPGQLVNENC LKRKAASEQD  300
SQEEPKKDLK SRGLCLVPVS CTLQVGSENG ADYWSHAFGG GFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_15679

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094473	0.0	BT094473.1 Soybean clone JCVI-FLGm-24H22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020220726.1	0.0	transcription factor bHLH68 isoform X2
Swissprot	Q8S3D1	1e-101	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A151T3K8	0.0	A0A151T3K8_CAJCA; Transcription factor bHLH68
STRING	GLYMA05G35610.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	3e-86	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]